Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 827 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 736 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 712 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 711 / 0 ARK1 receptor kinase 1 (.1) AT4G27300 705 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 671 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 653 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 649 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 632 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 632 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G413300 [exp] 1642 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413400 [exp] 1482 / 0 AT4G27290 823 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1283 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 1276 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1274 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 1271 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 1265 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 1261 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 1258 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 898 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 889 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 888 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 861 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 855 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 846 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 845 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 801 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 801 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 786 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G413000.2 pacid=42791155 polypeptide=Potri.001G413000.2.p locus=Potri.001G413000 ID=Potri.001G413000.2.v4.1 annot-version=v4.1 ATGGGTTACATTCCCGTACTTCTTTTTTGCTTCTTTTCAATGCTGAATAGAGTAACGGCCACAGCCATTGACATCATAAACACAACTCAGTTCATCAGGG ATGGCGATACCATAGTTTCAGCAGATGGAACCTATGAATTAGGATTTTTCAGCCCTGGAAATTCCAAAAACAGATACTTGGGCATATGGTATGGGAAAAT ACCAGTTCAAACTGTAGTTTGGGTTGCCAATAGAGAAACTCCCCTTAATGATTCGTTGGGGGTTTTAAAGATCACAAACAAAGGAATTCTTATCCTTCTC GATCGCAGTGGGAGCGTGATTTGGTCTTCCAACACAGCAAGACCTGCGAGGAATCCAACCGCTCAACTTTTGGAGTCAGGAAACCTTGTTGTGAAAGAGG AGGGCGATCACAACCTGGAAAATTCCTTGTGGCAGAGTTTTGAACATCCGACTGATACGATATTGCCAGGCATGAAGCTAGGAAGGAGTAGAATAACAGG AATGGATTGGTCCATGACATCATGGAAATCAGAAGATGATCCTTCCAGAGGTACCATTACATGTAAACTTGCTCCTTATGGATATCCTGACATGGTTGTG ATGGAAGGTTCGGAAGTGAAGTACCGATCTGGACTATGGGATGGTCTGCGGTTCAGTGGCGTACCTAGCACAAAACCAAATCCTATATACAAATATGAAT TTGTTTTCAATGAGAAGGAGATATTTTACAGAGAAAGTCTAGTTGATAAGTCGATGCATTGGAGGCTCGTGACAAGACAGAATGGTGATATCGCGAGCTT TACTTGGATTGAGAAAACACAAAGTTGGTTGCTTTATGAAACAGCAAATACAGATAATTGTGATCGATATGCACTATGTGGTGCAAATGGTTTCTGTGAT ATTCAAAGCTCTCCAGTGTGTGATTGCTTGAATGGATTTGCACCAAAATCCCCAGGAGATTGGGACGAGACTGATTGGTCAAATGGCTGTGTTAGAAGGA CTCCACTAAATTGTTCTGGAGATGGGTTCCGAAAGCTCGCTGGAGTGAAGATGCCTGAGACAAAATCATCTTGGTTTAGCAAGACGATGAATCTGGAGGA GTGCAGGAACACGTGCTTGGAGAAGTGCAACTGTACAGCATATTCAAATCTGGACATCAGGAATGGAGGAAGTGGGTGCTTGCTCTGGTTCGGCGACCTG GTAGACATTAGAGTTTTTGCTGAAAACGAGCAAGAGATTTATATACGAATGGCCGAATCAGAACTAGATATTGGAGATGGTGCCAGGATAAATAAAAAAT CCGAAACCAAGAAAAGGATCATAAAAAGCACTGTGTTATCTACTGGGATTCTGTTCGTTGGCCTAGCCTTGGTCTTATATGCTTGGATGAAGAAGCATCA GAAAAACATTATTCTGCCTACAGGACAAATGTCTATGGAAAAAAGTTCAAATAACATGCAGAGGAAAGAAGATCTGGAACTTCCATTGTTTGATTTCAGT AACTTGGCTTGTGCAACAAATAATTTCTCTATCGACAATAAACTTGGAGAAGGGGGTTTCGGAACAGTTTACAAGGGAACATTAGCAGATGGACGAGAAA TAGCAGTGAAGAGGCTCTCTAAGATTTCGAGACAAGGTCTTGATGAGTTAAAAAATGAAGCCAATTATATTATGAAACTTCAGCACCGGAATCTAGTGAA GCTTCTAGGATGCTGCATCGAAAGAGATGAAAAGATGTTGATCTATGAATTCTTGCCTAACAAAAGCTTGGACTTTTTTATTTTCGAAAAAACACGAAGC TTTCTACTTGATTGGCCTAAGCGCTACAACATTATCAATGGTATTGCTCGTGGACTCCTTTATCTTCACCAGGATTCAAGATTAAGAGTAATTCATAGAG ACCTGAAAGCCGGCAATATTTTATTGGATTATGAGCTGAACCCGAAAATTTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGGAAATGAAATTGAAGCCAA TACTAATAAAGTGGCTGGTACATACGGCTACATATCCCCTGAGTATGCAAATTATGGACTCTACTCGGTAAAATCAGACATCTTCAGCTTCGGTGTATTG GTGCTAGAGATAGTGAGTGGGAACAAGAACAGAGGATTCAGCCATCCAGACCACCATCTCAACCTTCTTGGGCATGCTTGGATACTGTTCAAAGAAAACC GGTCTTTGGAACTGGCTGCAGATTCAATAGTTATAACATGCAATTTATCAGAAGTGCTACGATCAATTCACGTGGGTTTATTGTGCGTGCAAGAAAATCC AGAAATTAGGCCAACCATGTCAAATGTAGTTTTGATGTTAGGTAATGATGATGTACTGCCTCAGCCTAAGCAACCAGGTTTCTTCACTGAAAGGGATGTG ATTGGAGCAAGCTATTCATCCAGCCTCAGCAAACCGTGTTCAGTTAACGAATGCTCGGTTTCAGAGTTAGAACCAAGATAG
AA sequence Show only first row Show all	>Potri.001G413000.2 pacid=42791155 polypeptide=Potri.001G413000.2.p locus=Potri.001G413000 ID=Potri.001G413000.2.v4.1 annot-version=v4.1 MGYIPVLLFCFFSMLNRVTATAIDIINTTQFIRDGDTIVSADGTYELGFFSPGNSKNRYLGIWYGKIPVQTVVWVANRETPLNDSLGVLKITNKGILILL DRSGSVIWSSNTARPARNPTAQLLESGNLVVKEEGDHNLENSLWQSFEHPTDTILPGMKLGRSRITGMDWSMTSWKSEDDPSRGTITCKLAPYGYPDMVV MEGSEVKYRSGLWDGLRFSGVPSTKPNPIYKYEFVFNEKEIFYRESLVDKSMHWRLVTRQNGDIASFTWIEKTQSWLLYETANTDNCDRYALCGANGFCD IQSSPVCDCLNGFAPKSPGDWDETDWSNGCVRRTPLNCSGDGFRKLAGVKMPETKSSWFSKTMNLEECRNTCLEKCNCTAYSNLDIRNGGSGCLLWFGDL VDIRVFAENEQEIYIRMAESELDIGDGARINKKSETKKRIIKSTVLSTGILFVGLALVLYAWMKKHQKNIILPTGQMSMEKSSNNMQRKEDLELPLFDFS NLACATNNFSIDNKLGEGGFGTVYKGTLADGREIAVKRLSKISRQGLDELKNEANYIMKLQHRNLVKLLGCCIERDEKMLIYEFLPNKSLDFFIFEKTRS FLLDWPKRYNIINGIARGLLYLHQDSRLRVIHRDLKAGNILLDYELNPKISDFGLARSFGGNEIEANTNKVAGTYGYISPEYANYGLYSVKSDIFSFGVL VLEIVSGNKNRGFSHPDHHLNLLGHAWILFKENRSLELAADSIVITCNLSEVLRSIHVGLLCVQENPEIRPTMSNVVLMLGNDDVLPQPKQPGFFTERDV IGASYSSSLSKPCSVNECSVSELEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413000 [exp]	0	1
AT3G17070			Peroxidase family protein (.1)		Potri.004G006350 [exp]	2.00	0.9159
					Potri.001G225804 [exp]	2.44	0.9135
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413300 [exp]	11.00	0.8693
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Potri.001G200800 [exp]	20.66	0.9042	ACE.2
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133700 [exp]	28.28	0.9108
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157400 [exp]	30.90	0.9067
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.013G125300 [exp]	33.85	0.9067	Pt-CYP82.15
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.010G123000 [exp]	38.72	0.7414
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212300 [exp]	41.47	0.9025
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.006G277300 [exp]	43.68	0.9013

Compare expression of checked genes

Potri.001G413000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.