Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31670 241 / 2e-79 Stress responsive alpha-beta barrel domain protein (.1) AT1G51360 180 / 1e-56 ATDABB1 dimeric A/B barrel domainS-protein 1 (.1) AT2G32500 48 / 2e-06 Stress responsive alpha-beta barrel domain protein (.1) AT3G17210 42 / 6e-05 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125701 [exp] 390 / 4e-138 AT2G31670 257 / 6e-86 Stress responsive alpha-beta barrel domain protein (.1) Potri.014G154900 [exp] 50 / 5e-07 AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1) Potri.010G151000 [exp] 44 / 1e-05 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037500 [exp] 42 / 5e-05 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 39 / 0.001 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034659 [exp] 282 / 3e-96 AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1) Lus10017873 [exp] 278 / 9e-95 AT2G31670 258 / 4e-87 Stress responsive alpha-beta barrel domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [poplar] [flax] Dim_A_B_barrel PF07876 [poplar] [flax] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Potri.001G413500.1 pacid=42790944 polypeptide=Potri.001G413500.1.p locus=Potri.001G413500 ID=Potri.001G413500.1.v4.1 annot-version=v4.1 ATGACAATGTTGTGTCTTAAAGCCGCACGTTCACGCACCGCCAAGCCATTTTCCTTCCCTTTCTCGTCTCAGAACCACCAACTCAAGCCCTTCTTCCTCT CCTTCGAGCCTTACTCTGCATCATCCAAATCCCAGATCAAAATGTCATCATCCACTCCATCCCAGACAGTAGAACACATAGTCCTCTTCAAAGTCAAAGA AAACACTGACCCCACTAAAATCAACACCATGATTAATTCCCTCAACCGTCTGATCTCACTGGACTCCGTACTCCACCTAAACGCCGGTGCCCTCTACCGC ACCAAATCCTCACCTATTCCCTTCACTCACATGCTCCACAGCCGTTACTCCTCTAAAGAAAACCTCTCCGCTTATGCTGTTCACCCTAGCCATGTCAGCG TGGTTAAAGAATCGGTTCAGCCAATCTGTGACGACGTCATGGCCGTCGATTGGGTAACAGATGATCTCAACGGTGGTGGTTCATTGGTCCCACCTCCTGG GTCAGCGATTAGGTTGTCATTCCTTAAACTAAAAGAGGGTTTGGGGGATGAAGTGAAAGATGAGATACTGGGGTTAATTAAGGGGATTAAAGGGCAATAT GGTGGGATTCATCAAATTAGCTGCGGTGAGAATTTCTCAGCTAGAGCCAAGGGTTATTCGATTGCGTCGCTAGCTGTTTTTCCAGGATTGAGTGAATTGG ATTCCAAGGAAGAGCTTGTGAATTTGGAGAAAGCCAAGTTCAGAGATTATCTGCAGAGCTTTATTGTTCTTGATTATGTTGTGCAGCCGTCTACCTCTAC TCTTTAA
AA sequence Show only first row Show all	>Potri.001G413500.1 pacid=42790944 polypeptide=Potri.001G413500.1.p locus=Potri.001G413500 ID=Potri.001G413500.1.v4.1 annot-version=v4.1 MTMLCLKAARSRTAKPFSFPFSSQNHQLKPFFLSFEPYSASSKSQIKMSSSTPSQTVEHIVLFKVKENTDPTKINTMINSLNRLISLDSVLHLNAGALYR TKSSPIPFTHMLHSRYSSKENLSAYAVHPSHVSVVKESVQPICDDVMAVDWVTDDLNGGGSLVPPPGSAIRLSFLKLKEGLGDEVKDEILGLIKGIKGQY GGIHQISCGENFSARAKGYSIASLAVFPGLSELDSKEELVNLEKAKFRDYLQSFIVLDYVVQPSTSTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	0	1
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	1.00	0.9396
					Potri.008G005500 [exp]	2.00	0.9258
					Potri.004G212550 [exp]	4.47	0.9178
AT5G39410			Saccharopine dehydrogenase (....		Potri.004G126100 [exp]	4.58	0.9116
AT1G03290			unknown protein		Potri.014G139000 [exp]	5.74	0.9060
AT5G65250			unknown protein		Potri.005G073500 [exp]	5.74	0.9228
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	6.00	0.9103	CHC901
AT3G57280			Transmembrane proteins 14C (.1...		Potri.003G094300 [exp]	6.40	0.8819
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	7.14	0.8989
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	8.00	0.8991

Compare expression of checked genes

Potri.001G413500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.