Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 766 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 758 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 711 / 0 ARK3 receptor kinase 3 (.1) AT1G11340 687 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 681 / 0 ARK1 receptor kinase 1 (.1) AT1G11410 671 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 667 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 666 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 643 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 610 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G414077 [exp] 922 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 903 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 900 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 895 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 872 / 0 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414200 [exp] 860 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 848 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 836 / 0 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125401 [exp] 836 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014812 [exp] 916 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 815 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 810 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 793 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 783 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 774 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 768 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 756 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 754 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 754 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G414000.1 pacid=42788504 polypeptide=Potri.001G414000.1.p locus=Potri.001G414000 ID=Potri.001G414000.1.v4.1 annot-version=v4.1 ATGGAGATCGCTATGCGTACAGGCCTGATTAATTCATTTACTAGCATTACAATGCTTTTGGTTTGCATCTTCTTACTCTTTTTATCACTAGCCTTTGCTA CACAAGACAATATCACTTCCAATGAATCCATTAAAGATGGCGAGAGTCCTCTAGTTTCAGCAGGTGGAACTTTTGAGCTGGGTTTTTTTAGCCCAGGAAA TTCAATGAATCGATTTTTGGGAGTATGGTACAAGAATGAATTGTCAACTCATAAAGAAGTTATTTGGGTTGCCAATAGAGAAATTCCGCTTAAGGATCGT TCTGGATTTCTAAATTTCACCCAGCAAGGAGTTTTGCTTCTTTTCAACGGAAACAATGAAAGAATTTGGTCATCCAACAAAACAACAAATGTTGAGAGTC CAGTTATGCAGCTATTGGATTCAGGAAATCTAGTTGTGATAGATGGGAAGGATAATAACTTCATTTTATGGCAGAGTTTTGAATATCCTTGTGATACGTT TCTACCAGGAATGATGATCGGAGGGAATTCACAAACTGGTGTGGATAGAAACCTGATATCATGGAAGAGCGCAGACGACCCTGGTCCAGGCCAATTTTCA TTTGGGATAGATCGTCAGGGGTTTCCACAGCTAGTCATCAGGAATGGAACTTTGAAGCACTGTAGGCTGGGTTCATGGAATGGAAAACGATTCACCGGGA CTCCTGATCTGCCTCGAGATCAGTTCTTGAAGTATGATTTTATTTTGAACAAGACTCATGCAGATTATAGTTATGAAATCCTGAGACCGGGTGCATTGTT GACGAGGTTAATTGTGAATCAGTCAGGATTTGTGGAACGCTTTATGCGTCCAATTCAAAATAATAATTGGACAAGTATATATTCGGCACCAAGAGATCTA TGTGACAATTATTCAGTATGTGGTGCACATATGATTTGCAAAATGGTCGATCAATCCCACAATTGTACTTGCTTGGAAGGATTTGAACCCAAATCTCATA CAGATTGGAGTAGAGGGTGTGCTAGAAGGAGTGCATTGAATTGCACACATGGCATCTTTCAGAATTTTACAGGGCTTAAGTTGCCGGACACTTCCCTTTC CTGGTATGATACAAGCATGAGTTTAGTAGAATGCAAGGACATGTGTCTGAAAAACTGCAGTTGCACGGCATATGCAAATTCAAATATCACAGGAGAAGCC AGTGGCTGCATACTCTGGTTTGGTGAATTGGTTGATATGAGAGAGTTTAGTACTGGGGGCCAAGACCTCTACATAAGGATGCCACCACCTTTGAAAACAG ATCAAACTACGTCAAACACAAATTCTGGTAAGAAGAAGCTTGTGGGAATCATACTCGGTTCCACAGTCCTTGCTGGAGTGCTTATGGTAGGACTAACCTT CTATATATGGAGAAAGAAACAGAGAAAGCAAGAAATAGAGGAAGACATGGAGTTACCATCGTTTCATTTGGCCACCATAGTGAAAGCAACGGATAACTTT TCAAGCAACAACAAGTTGGGACAAGGTGGTTTTGGACCGGTATATAAGGGTACATTGATTGATGGGCAAGAAATAGCAGTGAAAAGACTTTCAAAAAGTT CTCGGCAAGGATTGACAGAGTTCAAGAATGAAGTCATCTTGATAGCTAAGCTTCAGCACAGAAATCTTGTTAAACTTCTTGGCTGTTGCATTCAAGGAGA TGAAGTAATGTTGATCTATGAATTCATGCCCAACAAAAGCTTAGATTATTTTATTTTCGATCAAACAAGAAACAAATTCCTGGACTGGCAGAGACGTAAC CTCATTATCGGTGGCATTGCTAGAGGACTACTTTATCTTCATCAAGACTCTAGACTAAGGATTATCCATAGAGATCTCAAAGCCAGCAACATATTATTAG ATAAGGATATGAACCCCAAAATTTCAGATTTCGGAATGGCTAGACTGTTTGGAGTAGATCAAATTGAAGCAGACACAAATAAAGTGGTTGGAACATATGG ATACATGTCCCCCGAGTACGCTGTTGATGGGCGTTTCTCATTGAAATCTGACGTCTTCAGCTTCGGTGTTTTAGTCTTAGAGATAATAAGTGGGAAGAAA AATAGAGGATTTTCCCACCCGGATCACTGCCATAATCTTCTTGGACATGCATGGAAACTGTGGACGGAAGAGAGGGCATTGGAGCTTCTTGACAATATGT CAGATCGCCCTTATTCTGTATCTGAAGTATTGAGATGCATTCATGTGGGTCTGTTATGCGTGCAACAAAAGCCGGAAGAAAGACCAAATATGTCATCTGT GGTTTTGATGTTGGGCAGTGAGAATTCCTTGCCTGACCCAAAGCAACCTGGTTTTTTCACGGAAAGGAATATGCCCGCAGTGGACTCTTCATCAGGAAAT CATGAATCATCATCTATAAATGACCTAACTATTTCACAGCTAGATGCACGGTAG
AA sequence Show only first row Show all	>Potri.001G414000.1 pacid=42788504 polypeptide=Potri.001G414000.1.p locus=Potri.001G414000 ID=Potri.001G414000.1.v4.1 annot-version=v4.1 MEIAMRTGLINSFTSITMLLVCIFLLFLSLAFATQDNITSNESIKDGESPLVSAGGTFELGFFSPGNSMNRFLGVWYKNELSTHKEVIWVANREIPLKDR SGFLNFTQQGVLLLFNGNNERIWSSNKTTNVESPVMQLLDSGNLVVIDGKDNNFILWQSFEYPCDTFLPGMMIGGNSQTGVDRNLISWKSADDPGPGQFS FGIDRQGFPQLVIRNGTLKHCRLGSWNGKRFTGTPDLPRDQFLKYDFILNKTHADYSYEILRPGALLTRLIVNQSGFVERFMRPIQNNNWTSIYSAPRDL CDNYSVCGAHMICKMVDQSHNCTCLEGFEPKSHTDWSRGCARRSALNCTHGIFQNFTGLKLPDTSLSWYDTSMSLVECKDMCLKNCSCTAYANSNITGEA SGCILWFGELVDMREFSTGGQDLYIRMPPPLKTDQTTSNTNSGKKKLVGIILGSTVLAGVLMVGLTFYIWRKKQRKQEIEEDMELPSFHLATIVKATDNF SSNNKLGQGGFGPVYKGTLIDGQEIAVKRLSKSSRQGLTEFKNEVILIAKLQHRNLVKLLGCCIQGDEVMLIYEFMPNKSLDYFIFDQTRNKFLDWQRRN LIIGGIARGLLYLHQDSRLRIIHRDLKASNILLDKDMNPKISDFGMARLFGVDQIEADTNKVVGTYGYMSPEYAVDGRFSLKSDVFSFGVLVLEIISGKK NRGFSHPDHCHNLLGHAWKLWTEERALELLDNMSDRPYSVSEVLRCIHVGLLCVQQKPEERPNMSSVVLMLGSENSLPDPKQPGFFTERNMPAVDSSSGN HESSSINDLTISQLDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414000 [exp]	0	1
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.001G259100 [exp]	1.00	0.9989
					Potri.006G028601 [exp]	1.41	0.9985
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Potri.005G109300 [exp]	1.73	0.9978	MDPIP1.1
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Potri.006G218000 [exp]	2.82	0.9965
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.017G086300 [exp]	3.74	0.9966
					Potri.006G027800 [exp]	5.47	0.9976
AT1G75280			NmrA-like negative transcripti...		Potri.013G103701 [exp]	7.93	0.9932
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024800 [exp]	11.22	0.9964
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	11.40	0.9954
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	11.61	0.9946

Compare expression of checked genes

Potri.001G414000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.