Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54590 632 / 0 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 353 / 9e-119 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G24540 237 / 8e-73 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G52290 236 / 3e-72 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT5G15080 231 / 7e-71 Protein kinase superfamily protein (.1) AT3G24790 228 / 7e-71 Protein kinase superfamily protein (.1) AT3G07070 229 / 9e-71 Protein kinase superfamily protein (.1) AT3G19300 234 / 2e-70 Protein kinase superfamily protein (.1) AT2G18470 233 / 3e-70 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT3G01300 229 / 4e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131200 [exp] 728 / 0 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 402 / 5e-138 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 398 / 2e-135 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.019G094200 [exp] 241 / 3e-74 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.013G025700 [exp] 236 / 2e-73 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 241 / 7e-73 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.004G153600 [exp] 241 / 9e-73 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.002G241600 [exp] 234 / 1e-72 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.009G100400 [exp] 239 / 6e-72 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043083 [exp] 654 / 0 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 651 / 0 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 390 / 3e-133 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 386 / 1e-131 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 248 / 4e-75 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 241 / 8e-73 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10038174 [exp] 239 / 1e-72 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011866 [exp] 231 / 3e-71 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10038172 [exp] 239 / 6e-71 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 239 / 2e-70 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G415300.6 pacid=42793067 polypeptide=Potri.001G415300.6.p locus=Potri.001G415300 ID=Potri.001G415300.6.v4.1 annot-version=v4.1 ATGAAGGGGGAATCGTCAGGATTGATTATCGGGATTTCGATAGGGGTGGTGATTGGAGTGCTTTTGGCCATTCTTGCTCTGTTTTGTTTTAGGTACCATA GAAAGCGATCGCAGATTGGGAATAGCAGTTCAAGGAGGGCAGCGACTATCCCTATCCGGGCTAATGGTGCAGATGCATCTACTATCATGTCTGACTCGAC CATTGGTCCGGATTCACCTTTGAAAGCAGGAAGAAATGGTGTGTCCTTGTGGCTTGAAGGATTTAAGAGGAGTAGCGTGGGTTCAGTTTCTGGGATACCT GTGTATTCTTACAAGGATCTACAAAAGGCAACCTATAATTTTACAACACTAATTGGACAAGGAGCATTTGGTCCTGTTTATAAAGCTCAAATGACAACTG GTGAGACTGTTGCTGTTAAAGTTCTTGCAACTGATTCAAAGCAGGGGGAGAAGGAATTTCAGACGGAGGTTATGCTATTGGGAAGGCTGCATCACAGAAA CCTTGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAGCATATGCTTATATATGTCTATATGAGTAAAGGCAGTTTGGCTTCTCATTTATACCGAGAA GACATCAAACATTTGAGCTGGGATTTGAGGGTACATATTGCTTTAGAAGTAGCAAGGGGCTTGGAGTATCTTCATGATGGGGCAGTTCCACCTGTAATTC ACCGGGACATTAAATCTTCCAACATTCTGTTGGATCACTGCATGAGAGCCAGGGTAGCTGATTTTGGGCTTTCAAGGGAAGAGATGGTTGACAGACATGC AGCTAATATAAGAGGAACTTTTGGGTATCTCGATCCTGAATATGTATCTACAGGAACCTTCACAAAAAAAAGTGATGTCTACAGCTATGGAGTGTTGCTT TTTGAACTTATAGCTGGCAGAAATCCTCAACAAGGTCTTATGGAATATGTTGAACTTGCAGCAATGAATACTGAGGGAAAAGTTGGGTGGGAGGAAATAG TGGATTCACGTCTGGATGGGAAATATGATGTTCAAGAGCTTAACGAAGTGGCAGCTCTAGCATACAAATGCGTCAACCGTGCCCCAAGAAAACGGCCTTC AATGCGAGACATTGTGCAAGTTCTTTCCAGGATCCTCAAATTGAGGCACAATAAGAAGCATCACAAGAAATCCCTTTCTGCTGCCACAGCAGACGAAGTT TCATTCGATATGGATCAACAAGAAATCAGAACTCCCGTCTCTGATCGCCACCGGAGAGAGGAGTCGGTTGACAGTGCTGACACTTGTGAAGTATAG
AA sequence Show only first row Show all	>Potri.001G415300.6 pacid=42793067 polypeptide=Potri.001G415300.6.p locus=Potri.001G415300 ID=Potri.001G415300.6.v4.1 annot-version=v4.1 MKGESSGLIIGISIGVVIGVLLAILALFCFRYHRKRSQIGNSSSRRAATIPIRANGADASTIMSDSTIGPDSPLKAGRNGVSLWLEGFKRSSVGSVSGIP VYSYKDLQKATYNFTTLIGQGAFGPVYKAQMTTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGSLASHLYRE DIKHLSWDLRVHIALEVARGLEYLHDGAVPPVIHRDIKSSNILLDHCMRARVADFGLSREEMVDRHAANIRGTFGYLDPEYVSTGTFTKKSDVYSYGVLL FELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKYDVQELNEVAALAYKCVNRAPRKRPSMRDIVQVLSRILKLRHNKKHHKKSLSAATADEV SFDMDQQEIRTPVSDRHRREESVDSADTCEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.001G415300 [exp]	0	1
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	12.48	0.7977
AT2G47010			unknown protein		Potri.019G076900 [exp]	18.24	0.8328
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	20.24	0.8347	SHMT3
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	22.18	0.8321
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	24.53	0.8227	Pt-MOR1.1
AT4G34215			Domain of unknown function (DU...		Potri.001G300800 [exp]	41.64	0.7223
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	42.07	0.8278
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	42.24	0.7273
AT5G14230			unknown protein		Potri.001G333600 [exp]	42.93	0.7608
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	44.62	0.8155

Compare expression of checked genes

Potri.001G415300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.