Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54600 241 / 1e-81 Translation protein SH3-like family protein (.1.2) AT5G23535 67 / 5e-14 KOW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062600 [exp] 65 / 2e-13 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005180 [exp] 265 / 9e-91 AT5G54600 246 / 3e-83 Translation protein SH3-like family protein (.1.2) Lus10038125 [exp] 261 / 5e-89 AT5G54600 246 / 6e-83 Translation protein SH3-like family protein (.1.2) Lus10022069 [exp] 67 / 7e-14 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10042614 [exp] 67 / 8e-14 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10006905 [exp] 66 / 9e-14 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10014683 [exp] 45 / 2e-05 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF00467 [poplar] [flax] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Potri.001G415400.1 pacid=42787607 polypeptide=Potri.001G415400.1.p locus=Potri.001G415400 ID=Potri.001G415400.1.v4.1 annot-version=v4.1 ATGGCAGCGATGGCTGCACTTCAAAGCTCAATGGCCACTCTTTCACTCTCCTCCTCCAACTCTTTCTTTGGCCAACGCCTATCACTTCCTTCTCTCTCCT TTCCACAAGTCAAGTCACCAGAGAAGCCATGTCTCATTGTTGTGAAGATCAAGCGATGGGAGCGGAAGGAATGTAAGGAAAACAGCCTTCCTGTTTTACA CAAAATGCATGTTAAGGTAGGAGATACAATTCAAGTGATTGCCGGAGATGACAAGGGAAAAATTGGGGAGATTACTAAGATTTTTAGGCACAACAGCACT GTGGTAGTGAAAGAAATAAACCTGAAGACAAAGCATGTGAAGAGCAGAGAAGAGGGTGAACCTGGCCAGATTATAAAGATTGAAGCACCTATTCACAGTT CAAATGTGATGCTTTATTCTAAAGAAAAGAACATTGCAAGCCGGGTGGGTCATAAAGTTCTTGATGATGGGAAGAAAGTTCGGTACCTCATAAAAACTGG GGAAATAATTGATAATGCGGAGGGCTGGAAGAAAGTGAAAGAAGAGAGTAAGAAAACCGAAGTAGCTGCTACTACTACTTCATAG
AA sequence Show only first row Show all	>Potri.001G415400.1 pacid=42787607 polypeptide=Potri.001G415400.1.p locus=Potri.001G415400 ID=Potri.001G415400.1.v4.1 annot-version=v4.1 MAAMAALQSSMATLSLSSSNSFFGQRLSLPSLSFPQVKSPEKPCLIVVKIKRWERKECKENSLPVLHKMHVKVGDTIQVIAGDDKGKIGEITKIFRHNST VVVKEINLKTKHVKSREEGEPGQIIKIEAPIHSSNVMLYSKEKNIASRVGHKVLDDGKKVRYLIKTGEIIDNAEGWKKVKEESKKTEVAATTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	0	1
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	1.00	0.9924	Pt-RPL12.6
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Potri.001G184000 [exp]	1.41	0.9899
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	1.73	0.9897
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	3.16	0.9884
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	4.00	0.9889
AT5G14910			Heavy metal transport/detoxifi...		Potri.001G350500 [exp]	5.65	0.9848
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	6.00	0.9865
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.014G153000 [exp]	6.48	0.9851
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.004G045700 [exp]	7.74	0.9841
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	8.83	0.9750

Compare expression of checked genes

Potri.001G415400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.