Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27250 421 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G42800 273 / 2e-89 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 216 / 8e-68 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G61720 199 / 3e-61 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 197 / 1e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 197 / 2e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 192 / 4e-58 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 191 / 5e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 188 / 3e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 188 / 1e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229500 [exp] 270 / 4e-88 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G033600 [exp] 265 / 1e-86 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 228 / 3e-72 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 226 / 1e-71 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G030700 [exp] 224 / 2e-70 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 219 / 6e-69 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 219 / 7e-69 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 218 / 3e-68 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 217 / 3e-68 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021294 [exp] 396 / 1e-137 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10016968 [exp] 274 / 2e-90 AT4G27250 252 / 5e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10041031 [exp] 245 / 6e-79 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 225 / 3e-71 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 216 / 1e-67 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 197 / 1e-60 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 197 / 2e-60 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 196 / 5e-60 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 196 / 6e-60 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 195 / 1e-59 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G415500.1 pacid=42791041 polypeptide=Potri.001G415500.1.p locus=Potri.001G415500 ID=Potri.001G415500.1.v4.1 annot-version=v4.1 ATGGAGGTTGAGAAGAATACAGAGGGAGCTCTTCCTACATACTGTGTTACAGGTGCAAATGGCTATATAGGGTCTTGGCTAGTGAAGCTTCTTCTTCAAA GAGGCTACACGGTTCATGCCACCCTACGTGATCTCGCTAAGTCGTTGGATCTTTTATCATCGTGGAGGGGAGCTGACCGGTTGAGATTATTCAAAGCTGA CCTGCGAGAAGAAGGCAGCTTTGATGAGGCAGTCAGGGGCTGTGATGGTGTATTTCATGTAGCAGCTTCAATGGAATTCTACGTTGCTGGAAATGAAGAC AATGAAAATTATGTTCAGCGTAATATTATCGACCCTGCGATTGAAGGAACGCTGAACCTTCTCACATCTTGCTCCAAATCCAATACTGTGAAAAGAGTTG TCTTCACATCCTCCATTAGTACTCTTACTGCTAAAGACGGAGCTGGTAAATGGAGACAAGTAGTTGATGAAACTTGCCAGACTCCCATTGATCATGTCTG GAATACAAAACCACCTGGATGGATTTATGTACTCTCCAAGCGTCTAACGGAGGAAGCAGCATTCAAATATGCAAAGGATAATGGTATCGATCTCATTTCA GTAATAACTACTACTGTTGCTGGTGCGTTCCTAACTTCAAGTGTCCCATCAAGCATTCGAGTACTCCTATCTCCAATAACAGGTGACACCAAGTTCTTTT CAATACTATCAGCTGTTAATGCTAGAATGGGTTCAATTGCATTGGTTCACATTGACGATATATGTGATGCACATATATTTCTAATGGAGCAGACTAGAGC AGAAGGTCGATACATATGCAGTGCCCACAGTTGTGTATTGTCTCAATTGATTAATCATCTAGTAGAAGAGTATCCATGCTCAAACATCCAGAGGTTAGCG GAAAAACAAGGTTCAATTTCTCCAGAGATTTCTTCAAAGAAGCTCAGAGACATGGGGTTTAAGTACAAGCATAGCATTAAAGATATTATAAGTGAAACTA TCACCTGTTGCCTGGATCAAGGCTTTCTACCGCAGGTTAAAAGCAAATGTCATTGA
AA sequence Show only first row Show all	>Potri.001G415500.1 pacid=42791041 polypeptide=Potri.001G415500.1.p locus=Potri.001G415500 ID=Potri.001G415500.1.v4.1 annot-version=v4.1 MEVEKNTEGALPTYCVTGANGYIGSWLVKLLLQRGYTVHATLRDLAKSLDLLSSWRGADRLRLFKADLREEGSFDEAVRGCDGVFHVAASMEFYVAGNED NENYVQRNIIDPAIEGTLNLLTSCSKSNTVKRVVFTSSISTLTAKDGAGKWRQVVDETCQTPIDHVWNTKPPGWIYVLSKRLTEEAAFKYAKDNGIDLIS VITTTVAGAFLTSSVPSSIRVLLSPITGDTKFFSILSAVNARMGSIALVHIDDICDAHIFLMEQTRAEGRYICSAHSCVLSQLINHLVEEYPCSNIQRLA EKQGSISPEISSKKLRDMGFKYKHSIKDIISETITCCLDQGFLPQVKSKCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27250			NAD(P)-binding Rossmann-fold s...		Potri.001G415500 [exp]	0	1
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Potri.002G195300 [exp]	5.74	0.6437
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432680 [exp]	7.28	0.7082
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	10.09	0.6634
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	12.64	0.7066
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	15.49	0.6926
AT3G14470			NB-ARC domain-containing disea...		Potri.004G169800 [exp]	22.24	0.6733
					Potri.012G017950 [exp]	27.14	0.5748
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.001G027900 [exp]	39.11	0.6361
					Potri.010G210400 [exp]	39.79	0.6376
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	45.60	0.6167

Compare expression of checked genes

Potri.001G415500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.