Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54630 520 / 0 C2H2ZnF zinc finger protein-related (.1) AT4G27240 365 / 2e-123 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 209 / 1e-63 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 186 / 9e-54 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G29660 165 / 1e-46 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 109 / 6e-27 unknown protein AT4G22560 103 / 5e-25 unknown protein AT4G12450 92 / 7e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131300 [exp] 675 / 0 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.004G030800 [exp] 323 / 4e-107 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.005G173400 [exp] 211 / 2e-63 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 207 / 2e-62 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 201 / 1e-59 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.001G249900 [exp] 180 / 3e-52 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.002G023200 [exp] 180 / 3e-52 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.009G043900 [exp] 176 / 6e-51 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.003G111800 [exp] 103 / 9e-25 AT4G22560 263 / 3e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043080 [exp] 566 / 0 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018388 [exp] 267 / 2e-85 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 257 / 1e-78 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10024333 [exp] 200 / 2e-61 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 201 / 1e-59 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 199 / 5e-59 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 199 / 8e-59 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 199 / 1e-58 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018389 [exp] 152 / 1e-44 AT5G54630 166 / 4e-50 zinc finger protein-related (.1) Lus10018219 [exp] 154 / 5e-42 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G415600.1 pacid=42792891 polypeptide=Potri.001G415600.1.p locus=Potri.001G415600 ID=Potri.001G415600.1.v4.1 annot-version=v4.1 ATGCCAACAGTTTGGTTCTCTTTGAAGAGATCTCTACATTGCAAATCAGAGCCATCAGAAGTTCACGACCCAAAATCGACAAAGCATATGAGTACAATCT TGACGAGAAAAGCAGGAAGGTCTGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATACATGGAAGCAAAAGGCACATGGAGAAGCCACCAAGTTG TAGTCCAAGATCCATTGGAAGCAGTGACTTTCTTAACCCATTAACCCATGAAGTTATTTTAAGTAACTCAAGGTGTGAGCTCAAAATCACAGGTTTTGGC GGGTTCCAAGAAGGGGTTGGTAGTGGTGTTATTAGTCATGGTAACAGCCATAATGGTGCTAGTGGTGGTAGTAACGGCGCTGTTGGTTCAACTTTTGTTG GTACTTTAAGGCAAGGAACCCCAGGACCTGGAGGACATCCTACAATGCACTATTTCAACCCTTCAATTAGGAACACAGCTACTCCTCCAAGAAAGTCTCA TTTTCTTTTATCAGACAGAGAAGCGCCTGGATTTGGAGGTTCTGGTATATTTGGTGCTGGTGGACATTCAAGCAGTAGGGTCTCTCTTGAGACAAAGTTT AATGGTTCTTCTACACTCACTTGCCATAAATGTGGAGAGCAGTTTAACAAATGGGAAGCTGCTGAAAATCATCATCTCTCCAAGCATGCTGTCACCGAAC TTGTGGAAGGTGACTCATCACGAAAAATTGTTGAAATCATATGCCGAACGAGCTGGTTAAAGAGTGAAAACCATTGTGGTCGAATTGAAAGAGTGCTGAA GGTTCACAGCATGCAAAAAACTCTAGCACGATTTGAAGAATATAGAGAGATGGTGAAAATTAAGGCCAGCAAGCTCCCAAAGAAGCACCCTCGGTGCATA GCTGATGGGAATGAGCTTTTGAGGTTTTATGGCACGACTGTTGCATGTTCTCTTGGCGTAAATGGTTCCTCAAGTCTATGTGTATCTGAGAAATGCTGTG TTTGTCGAATTATTCGAAATGGGTTTTCAGTCAAGAAGGAGCTTAAAGGTGGAGTAGGTGTGTTCACAACTTCAACCAGTGGACGAGCTTTTGAGTGTAT TGAAATATTTGAAGATGATCCATGTATAAGGAAAGCTTTGATAGTATGCAGAGTGATTGCTGGCAGGGTCCATAGGCCTTTGGAGAATATACAAGAAATA TCTAGCCAAACGGGATTTGATTCTTTGGCAGGGAAGGTTGGTCTCTATTCAAATATTGAGGAGCTTTATCTGCTCAATCCTAAAGCTCTGCTTCCTTGCT TTGTGGTAATCTGCAAATCCTGA
AA sequence Show only first row Show all	>Potri.001G415600.1 pacid=42792891 polypeptide=Potri.001G415600.1.p locus=Potri.001G415600 ID=Potri.001G415600.1.v4.1 annot-version=v4.1 MPTVWFSLKRSLHCKSEPSEVHDPKSTKHMSTILTRKAGRSGCSRSIANLKDVIHGSKRHMEKPPSCSPRSIGSSDFLNPLTHEVILSNSRCELKITGFG GFQEGVGSGVISHGNSHNGASGGSNGAVGSTFVGTLRQGTPGPGGHPTMHYFNPSIRNTATPPRKSHFLLSDREAPGFGGSGIFGAGGHSSSRVSLETKF NGSSTLTCHKCGEQFNKWEAAENHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHSMQKTLARFEEYREMVKIKASKLPKKHPRCI ADGNELLRFYGTTVACSLGVNGSSSLCVSEKCCVCRIIRNGFSVKKELKGGVGVFTTSTSGRAFECIEIFEDDPCIRKALIVCRVIAGRVHRPLENIQEI SSQTGFDSLAGKVGLYSNIEELYLLNPKALLPCFVVICKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.001G415600 [exp]	0	1
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.015G142200 [exp]	2.44	0.7303
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	8.77	0.7727
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	15.81	0.7199
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.017G033300 [exp]	17.60	0.7556	Pt-BIO2.2
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	20.19	0.7150
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	37.41	0.7014
AT2G27310			F-box family protein (.1)		Potri.002G054500 [exp]	37.78	0.6602
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Potri.016G125600 [exp]	39.97	0.6493
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	40.89	0.6699
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	41.46	0.7018

Compare expression of checked genes

Potri.001G415600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.