Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38070 590 / 0 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131500 [exp] 1637 / 0 AT4G38070 580 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G076400 [exp] 132 / 2e-36 AT4G38070 82 / 6e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025718 [exp] 697 / 0 AT4G38070 669 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035943 [exp] 693 / 0 AT4G38070 680 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G415800.2 pacid=42790901 polypeptide=Potri.001G415800.2.p locus=Potri.001G415800 ID=Potri.001G415800.2.v4.1 annot-version=v4.1 ATGGACAGGATCTGTGAAGAGTTAGATGAAGCAAAAGCTGAGATTGAGAAGCTCAAAGCAGATTTGAGATGCAAAGCAGAATTTTCTGACAACTTGAAGA AAGCTCATGGTGAACAGCTTATCCGAACCCAAGAAGCATGTTCGAAAGTTGAGAGACAGGCCCAAGAATTAAATGCTAAGGAAGAGGAAATCTCCACTGT GAAGCGAATGTGTGAAGATTTGCAATGCAGTTTGAATGAAAAAGAATCCATCATCAGACGTTTAAGCACTGCAAATGATAAGCTTAAAGTTGATTGCGGT GAGAAGTATAAAAAATGGGAGGAGGAGAAAAGGGGGTTAGTGTTGGCACTAGATGAGTCAAATGAGAAGAACATAGATCAAGAACAAAAGATTCATGTGT TTATGGCAGAGATTGAACGTTATAAGGGGCTTCTATCTGCTTCGCAGAAGAAATGCTTGGCAGCAGAGAAAAATGCCAAAGCATCCATAGAGATGAGGGA AAGGGATTCTATGCTACTCAAGTTGGAGGAGGAGAGCAGGAAGGTTGAAAATCAGCTAAAATGGAAGAAAGAGCAGTTCAACCATCTAGAAGAAGCACAT GAAAAGCTCCGATATCAGTTCAGGGAAAGCAAGAAAGAGTGGGAGATGGAGAGGTCCACATTGATTGATGAAATTTGCTCACTACAGACACGCTTAGATT CTCAGACTAGAATGTCAGAAGATCTTGAAAAACAGTTCAGGATGTGCAATGAAGCTTTAGCTCATGAAGAAAGCAGGAGAAAGTATCTTGAAGTTGAGGT TTCTGAATTTAAAGCGCGCTTTGAGAATGTTTTCACCGAGTGTCAGGATGCAAGGTCACAACTAGAATGCTTGGCCACTCAAAGGGACATGGAAATTGCA GCTCTGAGACATTCTTTGGTTACCAAGGAGACATTTTACAAAGAAATTGAGTACAAAGCAGGAAAACTAGAGCAAGACAACCAGGAGTTGCTGGTGTCAC TCAAAGAGCTTCAGGAGGCTGGGATTCGGGAAGTGGGAAATTCTTCTTTGGCAAAAATGCAAAACAAGCTCAAGAGTTTGGAGCAGATGCACAGAAATTG CTCTGCAAATCTTAAAGCTAAAGAAGCTGAATGGAGCTCTCAACTGGAGAAATTGACTGGAGAGCTGGATAATCACAGGTCTGCACTACAGAGCAAAGAA ACAGTAGTAAAAGAGCTTGATATGGAATTGGAAAATTGCCACTCTGTGATAATGCAGTTGGAGTTGCAGAATGAGGAGGCTTCGACAATGCTATTGGTAT TGAAATCAGGCATAACTGAGGCTCAACTGAACATTGGGAATGATGAGACTGAGGTGAGGCTTCATGACAAAGAAAGAGGCGAAGATGTCTCTCTCTTGAT GAGGCAGCTGGAGACAAAGAACACTGCTCTGGCTAAAGCAATGACAGATTGTGAGGAGGAACGTCAAAAGGTTGCATCTTTATTGAAGAGAGTTGAGTAC CTGGATCTTGTTGAAGAGCAGCGATTATTGATGCAGAAAGAGCTTGAGACATACAAAGAATTGCTTGAGGAATCATCAAGGTGTCAACTTTGCTTCAAGA AGCAAGCTTTGCAGACAGAAAGTGACTTGAAAGATAAACTTAAGGCAGTTTGTGATGCCTTGGATGTGGCCAACTCAGAATTAGCCAAAGAACATCAGAA GGTAGTATCTTTGTCAAGGAGAGCCAAGTCCTTGGATTTTATAGAAGAGAAGTGGCTCTTGATGCAGAAAGAGTTGGAGAAGTGCAAGGAAGTGCTTGAG GAGTCATCTAGGCGTCAAAGTTGCCTAGAAGAGCAAGCTTCCCAGATTGAAAACGAGTTGAAAAATAAATTTAGAGAAGTTTGCGACAAATTCGACATGG CCAGTTCAGAATTGGTGGAACATCGTGAGAAGGTGGAATGTTTATCTAGGAGGGCTGAGCACTTCGATCTTGTTGAAGAGCAACAACTCCTGATGCAGAA AGAGCTTGAGAGGTATAAGGAAATGGTCGAAGAATCATCTAGGAAGCAGCTTCTCATAGAAATGAAAGCTTTGGATGTGGAAACTGACTTAAAGGAGAAA CTAAGAGAAGTTTGTGATGAATTAGAGACTGCAAAGGCTGAATTAGCTAAAGAAAACAAGAACGCGGCATCTTTGGCGAGAAGAGTTCAGTCTCTAGATC TTATTGAAGAGCAACATCTCCTGATGCAAAAAGAACTCAAGAAATACAAGGAAATGCTTGAGAAGGCATCCAGGTGCCAACATAGCTTGGAAAAGCAAGC TTTCCAGAAGGAAAACGACTTGAAAGAGAAACTTCGAGAAGTAAGTGATGAGTTACACAGATTGAAATCTGATTTTGCAGCTAAAATTTGTGAAGGACAT GCTGTGGAATTTGAATTGTGGATATGGAAATCGATTGCTCATCGATTAAAAGATGATCTTGAAGAAAGCCAGTTGTTGCGCAAAGACATAGAAGCTTCTC TTCTTTCACAAGCAGAAGTCGAGCATACTATCAAGCAGGAGAAAGATGGTCTCGCCCAAATGTTACAAGTAAGGGACGGTAAAATAGATAACCTGCAGCA GCAGATTGAATTCTTTGGGAAAGAACTTAAAACAAGAGAGTCAGCTGCCACTTCTGCAATGGAGACAGTAATGTCCTTTGAGTCAGAGAGAGAAGGTTTT CTACAAACCATGAAAGAGAAGGACAAATTGATTGATGATCTGCAGAAAGAGGTTGGGTGGCTGGAGCAAGAATCATTGAGAAGAGAACTTGAAGGTGCAA TGTTGACACAAATAGAGGCAGAAAGAAAATTTGACCACGAAAAAGAACAAATTATCCAGCTTGTGGAGGAGAAAGATCAAAGAATAGATGACCTCTTGCA GCTTGTGAAGTCGATGGAACAAAAATTTAATGGCTCGCTGACCTCTTTCTCTCTGGAGCTTGCTGAGAAGCAGGCTGAGATTCATTTGCTCCACGAGGCT TGGGAAAAGATTGCTTCAGCTGAGATTCTGGCCCAACTGGAAATTGAAGAGAAGAAGATGATGATAATAGAGCTGGAGGATGACATCTTTTCTATACGAA AGGAACTGGAATTACAGCAAAAATCACTCTCGGGTTCGAAAAAGAAGGCACTGGAAATTGAAGCTGAACTAGAAGCAAATCAGTTGGAAATGAAGAAATT GAAGAGTCTAATGGAGACACAGCTGAGAACATCAGAAGCCTCAGTTGATGACCTCAAAAATGGGAACAGAAGTTTAGCTGGAAATGTCATGAAGTTGTCA TCAGAAAGGGACAATTTGTTTGGCTTGCTCACGGAACTTGTTGAGAGAATTAACCAGTTCTCCGATGAAGACATGCAATTGATGGGAACCTTGGGAACCT TGGAAAGCATGATGCAGTCATTTGACAATAGTGGATCCGGTCCCATCTTGAAGTGTGATAGTGAGCTTTTCAAGTCTGTAAAAGAGAATGTCAATACGTG TCCTTCACCTACAACAAAGAGATTTCAGTCTGTTATTGAGGATAGATCACCATTTAGAGAGCTCAACTAG
AA sequence Show only first row Show all	>Potri.001G415800.2 pacid=42790901 polypeptide=Potri.001G415800.2.p locus=Potri.001G415800 ID=Potri.001G415800.2.v4.1 annot-version=v4.1 MDRICEELDEAKAEIEKLKADLRCKAEFSDNLKKAHGEQLIRTQEACSKVERQAQELNAKEEEISTVKRMCEDLQCSLNEKESIIRRLSTANDKLKVDCG EKYKKWEEEKRGLVLALDESNEKNIDQEQKIHVFMAEIERYKGLLSASQKKCLAAEKNAKASIEMRERDSMLLKLEEESRKVENQLKWKKEQFNHLEEAH EKLRYQFRESKKEWEMERSTLIDEICSLQTRLDSQTRMSEDLEKQFRMCNEALAHEESRRKYLEVEVSEFKARFENVFTECQDARSQLECLATQRDMEIA ALRHSLVTKETFYKEIEYKAGKLEQDNQELLVSLKELQEAGIREVGNSSLAKMQNKLKSLEQMHRNCSANLKAKEAEWSSQLEKLTGELDNHRSALQSKE TVVKELDMELENCHSVIMQLELQNEEASTMLLVLKSGITEAQLNIGNDETEVRLHDKERGEDVSLLMRQLETKNTALAKAMTDCEEERQKVASLLKRVEY LDLVEEQRLLMQKELETYKELLEESSRCQLCFKKQALQTESDLKDKLKAVCDALDVANSELAKEHQKVVSLSRRAKSLDFIEEKWLLMQKELEKCKEVLE ESSRRQSCLEEQASQIENELKNKFREVCDKFDMASSELVEHREKVECLSRRAEHFDLVEEQQLLMQKELERYKEMVEESSRKQLLIEMKALDVETDLKEK LREVCDELETAKAELAKENKNAASLARRVQSLDLIEEQHLLMQKELKKYKEMLEKASRCQHSLEKQAFQKENDLKEKLREVSDELHRLKSDFAAKICEGH AVEFELWIWKSIAHRLKDDLEESQLLRKDIEASLLSQAEVEHTIKQEKDGLAQMLQVRDGKIDNLQQQIEFFGKELKTRESAATSAMETVMSFESEREGF LQTMKEKDKLIDDLQKEVGWLEQESLRRELEGAMLTQIEAERKFDHEKEQIIQLVEEKDQRIDDLLQLVKSMEQKFNGSLTSFSLELAEKQAEIHLLHEA WEKIASAEILAQLEIEEKKMMIIELEDDIFSIRKELELQQKSLSGSKKKALEIEAELEANQLEMKKLKSLMETQLRTSEASVDDLKNGNRSLAGNVMKLS SERDNLFGLLTELVERINQFSDEDMQLMGTLGTLESMMQSFDNSGSGPILKCDSELFKSVKENVNTCPSPTTKRFQSVIEDRSPFRELN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.001G415800 [exp]	0	1
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	2.82	0.9649	TOP2.3
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	2.82	0.9619	ATK1.2
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	6.32	0.9554
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	9.16	0.9513	ATCSLD5.1
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	9.38	0.9481
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	10.95	0.9558
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	11.40	0.9521
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	12.00	0.9422
AT4G17240			unknown protein		Potri.006G017200 [exp]	14.69	0.9406
AT5G11510	MYB	ATMYB3R-4, AtMY...	myb domain protein 3R4, myb do...		Potri.006G241700 [exp]	16.88	0.9429	Pt-MYB3.2,MYB160

Compare expression of checked genes

Potri.001G415800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.