Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56290 768 / 0 CwfJ-like family protein (.1) AT5G56900 75 / 5e-14 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152100 [exp] 89 / 5e-18 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022209 [exp] 839 / 0 AT1G56290 751 / 0.0 CwfJ-like family protein (.1) Lus10021219 [exp] 837 / 0 AT1G56290 739 / 0.0 CwfJ-like family protein (.1) Lus10008172 [exp] 550 / 0 AT1G56290 509 / 3e-175 CwfJ-like family protein (.1) Lus10021589 [exp] 69 / 1e-11 AT5G56900 803 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2) Lus10027982 [exp] 0 / 1 AT2G48060 1580 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04676 [poplar] [flax] CwfJ_C_2 Protein similar to CwfJ C-terminus 2 CL0265 [poplar] [flax] HIT PF04677 [poplar] [flax] CwfJ_C_1 Protein similar to CwfJ C-terminus 1
Representative CDS sequence Show only first row Show all	>Potri.001G415900.1 pacid=42792083 polypeptide=Potri.001G415900.1.p locus=Potri.001G415900 ID=Potri.001G415900.1.v4.1 annot-version=v4.1 ATGCTTTCTGGGGTGAAGTTTATTCCCCGAGATGAAGTTGATAAGGGGAAAGGTGAAAATAGGGATGATTTTGTAGAGAAGAGGAAGGAATCTGGTAGTA GAAGGGAAAAGAATAGGAGGAAGAAGAAGAAGATTTCGCGTCATGATAGCAATTCTGATGATGATCTTGAGAGAATTAAGAAACGGTCTAAGAAGAGTAA GAAGTGGTACTCGTCGGATGAGCATTCGTCAGAAGAATCAAGTGATAGTGAGAGTGGTTCAGATGGAAAGAGTAATAGTAAGAGAAGAAAGAAAAAGAGA AAGAGTAGGAAACGTTTTTCATCTGATGAATATTCATCGTCTTCTTCAGAAGGTGAGGCTCAAAGAGGAAGTGCGAAAGGTGGTAGGAAGAAAAGCAAGG AAAAACAGGGTGAAATTGGTGATGACTTTAGTGATGATGGCAGAGAATCCCATTCTATAAATAAAATAGACATTGCCAGGAAAGAAATGGGCTTGGATTG GATGCTTAGGCCTGCAAAAGATGTTGAGAGAGGGCCAACAGTTAGTGTTGATCATGACCTAGAGGAACCCCCTGCTGAAGAGATAATGAGAGTGAACCCT CGGGAGTTGAATCCATATTTCAAGGATAATGGAAGTGGTTATCCGGATGATGGAGTTGAGAAAAAAGTTGGTGTAGATCAACTTCCTTCGTCTTCACTTA TTGGGGATGGAGGTGCAAGCTGGAGGTTAAAAGCCTTAAAGCGTGCACAAGAGCAAGCAGCTCGGGAAGGAAGAAAGCTTGAAGAGATTGTGGAAGAAAG ATGGGATTCCCTTGGTCAATTGGCTGTCTCTGCAGCATCTCGAATGGCTGCCCCATCTCGTGCTCATCTGCATGCAATAAAAAATAGAAAGAAAGGATTA ACCGAGAAACAAGATGCTATGACAGATGGTCAAAGTGGGAGAGATATTGGAAAGAGTGCTGATCGAGGCTACTTGAAGGATGTATCTGTCCGCCATCCTG AAATGAGAGCTCCAAAAGTCCATAACACTTTGTCATGGGGAAAACGAAAAAGTCAAAATATGTCTACTAAGGATGCAGCCCTTGTTTCCGCTGCAGCATC TAGCATGAATAAGTTTTCTGATGATGGAAGTTTTATGAGCAAAATTCTTGGTAAGCAGAATAAGGATGCTGGAAGTTCTGTTGGTTCCTATTCAAACCAA GAGGAGAATTTGGAGTCAAAAGTGGCTTCACCTGAAATGAACAAACCCAGTGAAGGCAGTCTGTTGGTTAAGGAAGCACTAAGTGCAAACCAATTGGCAG CCAAGGCTTTGCAGCTTCGCATGAAAGGAAAGCATGAAGAAGCGGAGAAACTCATGCAAGAAGCTGAGAGCATCAAAGTGAAGCAGGGTGTTGGAGAGAA TTCAAACAGACCTCAGATAGTCAGTAGCACAAACAGATCTGCTATTCAAGGTGTTTCTGCTAGGAGAAAGGAAGATGAAGATGCTGATAGGCATCTTGCC CAAACAATAATGCAGAATAAACAGTACAGTTTATCTGGCCGGGCTGACGATGAATATGATTTTGATGACGGCCCAAGGAGGAAGTCTGGTAGGAAGGGTA GAGACAATGATCACAAGGTCTCTAGCAAGAATGATCTTGGAAAGCGTATCTTGACTCAGCAAGAACGCTGCAATTTTTGCTTTGAGAATCCAAACCGGCC AAAACATCTTGTTGTGTCGATAGCAAACTTCACATATTTGATGTTGCCACAGTGGCAGCCCATTGTGCCAGGCCATTGCTGCATCTTGCCAATGCAGCAT GACTCAGCCACAAGGAATGTTGACAATAACGTGTGGGAAGAAATTCGCAATTTCAAGAAATGCCTTATAATGATGTTCTCCAAGCAAGAGAAGGATTTAG TGTTTCTTGAAACAGTGATCAACTTGTCACAACAAAGGCGCCATTGTTTGATCGAGTGCATTCCTTTGCCTCGAGAAATTGCTAAACAAGCCCCTCTATA TTTTAAGAAGGCAATTGATGAAGCTGAAGATGAGTGGAGTCAACACAATGCAAAGAAGCTCATTGATACAAGTGAGAAAGGACTTCGTGGTTCAATCCCC AAGGACTTTCCTTATTTCCATGTTGAGTTTGGTCTAAGTAAGGGGTTCGTCCATGTTATTGATGACGAGAAAAACTTTAAAAGCAGCCTTGGCTTGAATG TTTTAAGGGGAATGTTGCGTTTACCTGAGGAGGACATGTACCGGCGCCGGAGGCATGAATCAGTGGAGGCGCAAAAACTGGCTGTTGCAAAATTTGCTCA AGATTGGGAACCGCTTGACTGGACGAAACAACTCTGA
AA sequence Show only first row Show all	>Potri.001G415900.1 pacid=42792083 polypeptide=Potri.001G415900.1.p locus=Potri.001G415900 ID=Potri.001G415900.1.v4.1 annot-version=v4.1 MLSGVKFIPRDEVDKGKGENRDDFVEKRKESGSRREKNRRKKKKISRHDSNSDDDLERIKKRSKKSKKWYSSDEHSSEESSDSESGSDGKSNSKRRKKKR KSRKRFSSDEYSSSSSEGEAQRGSAKGGRKKSKEKQGEIGDDFSDDGRESHSINKIDIARKEMGLDWMLRPAKDVERGPTVSVDHDLEEPPAEEIMRVNP RELNPYFKDNGSGYPDDGVEKKVGVDQLPSSSLIGDGGASWRLKALKRAQEQAAREGRKLEEIVEERWDSLGQLAVSAASRMAAPSRAHLHAIKNRKKGL TEKQDAMTDGQSGRDIGKSADRGYLKDVSVRHPEMRAPKVHNTLSWGKRKSQNMSTKDAALVSAAASSMNKFSDDGSFMSKILGKQNKDAGSSVGSYSNQ EENLESKVASPEMNKPSEGSLLVKEALSANQLAAKALQLRMKGKHEEAEKLMQEAESIKVKQGVGENSNRPQIVSSTNRSAIQGVSARRKEDEDADRHLA QTIMQNKQYSLSGRADDEYDFDDGPRRKSGRKGRDNDHKVSSKNDLGKRILTQQERCNFCFENPNRPKHLVVSIANFTYLMLPQWQPIVPGHCCILPMQH DSATRNVDNNVWEEIRNFKKCLIMMFSKQEKDLVFLETVINLSQQRRHCLIECIPLPREIAKQAPLYFKKAIDEAEDEWSQHNAKKLIDTSEKGLRGSIP KDFPYFHVEFGLSKGFVHVIDDEKNFKSSLGLNVLRGMLRLPEEDMYRRRRHESVEAQKLAVAKFAQDWEPLDWTKQL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	0	1
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	1.73	0.9278
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	2.00	0.9263
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.012G034200 [exp]	3.00	0.9096
AT4G33740			unknown protein		Potri.009G083900 [exp]	3.16	0.8877
AT5G17900			microfibrillar-associated prot...		Potri.019G039900 [exp]	3.60	0.8647
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.014G104500 [exp]	3.74	0.8588
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	4.47	0.9040
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	5.65	0.8933
AT3G51650			unknown protein		Potri.006G107500 [exp]	7.21	0.9065
AT2G25670			unknown protein		Potri.018G034800 [exp]	8.00	0.8555

Compare expression of checked genes

Potri.001G415900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.