Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 623 / 0 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 521 / 1e-172 AFH3 formin 3 (.1.2) AT3G05470 382 / 4e-118 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G25500 386 / 7e-118 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G67470 365 / 9e-112 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT2G43800 353 / 5e-107 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 304 / 2e-90 ATFH8 formin 8 (.1) AT1G59910 294 / 4e-85 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 241 / 1e-67 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 231 / 4e-64 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131700 [exp] 800 / 0 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 572 / 0 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 398 / 1e-123 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 396 / 9e-123 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 395 / 6e-121 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 392 / 7e-121 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 389 / 7e-120 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 390 / 5e-119 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 380 / 1e-116 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011168 [exp] 657 / 0 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 650 / 0 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10036609 [exp] 613 / 0 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 603 / 0 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 533 / 6e-176 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10039705 [exp] 530 / 3e-174 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015091 [exp] 530 / 2e-168 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 464 / 5e-150 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10004505 [exp] 387 / 2e-120 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 378 / 1e-115 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.001G416100.4 pacid=42787683 polypeptide=Potri.001G416100.4.p locus=Potri.001G416100 ID=Potri.001G416100.4.v4.1 annot-version=v4.1 ATGCTTATAAGGATGAATCATCAACCAATGGTTCATATGAAGTCAAACTGTTCCAGTTTTTTGGTGATTCTGCTATGTGCATCTGTGGTGGTGAGCTTGG AATACAGGGGAAGGACAGAGGAAGTGTTTCTGAGGCAATTAGATGACCCAGCAACTGGCTATGTTGATAAGGACGCGGCAGAGCTACTTTGCATCATTTG CAAGGTAGATTTGATTCAACTGAAGGAAGCTGATGAAAATCTTAACTTCTGTTTCCCTGAGGAAACATTTAATGGGGCCAGTGAACTAAGGTCTAAGGGT TGGTCAGTGTCAAAAGAAAACATTCAGAAATTGATTAAAGTCCCACAGCCCCAGTTAAAGGAAACTCTTTTAGATTGTATAAGAAAGGACAATCATCTGT TCCATGTTTCTGGAGATGAAGGTGGTGCAGATAATTATCACACAAGGCGTGCTGTTGCAAGAAGGAATTTGCTTCAGATCATCTCAGAGCCCCCAGCCCC AGTGCCTGTCGTTGGATCACCATTTCCTAGTCCCTCACCATCCCCAGATCTGGCACCTTCTCCAGCTTCCACTCCAAACTCTATCCCTTCACCACAAGAA CCATTTTTTCCTCACCTAACGCCACCTCCTCCCAGTCCCAGTGAAAACTCTTCTTCTAGTCAAACCTCTGGTCCTATTGAGCCAGATAATGGAAATAACC ATAAAACAGTTGTTATTGCAGTAGTTGTGACTGCTGGAGTGACATTTGTTGTTGCGGCATTGTTCTTCTTGCTCTGTACTAAGGTTTGTTGGAGAGGACC TGGAGCTAGACGAAATGATGAAAGGCCCCTTCTTAGCCTAAGCTTAAGTGACTATTCTGTTGGTTCTACACATAAAACTTTTGGCTTAGGAAATTCTATC GAACAAGAGAAGCTTGGTCATCATTCTTTTGGTAATATATCAAGCCATGAGAAAATGGGATCATCTTTGGAGAGCCTTTTTAATAAGTCTGATGCTCTTA ATGTATCGCTAGATGAAAGTATGTCATTAGGAGCTGTTAGTGCTGCCGCCAAATCCTCTGGTGACAGCAAGATGAACACACCTGTACCACATCCTCCAGG AGGGACAGGCAGCAACCCTTTTTTGAAGCCTCCTCCTGGAAGAGCAGAACCACTTCCTCCTGAACCGCCTGCTAGTCTCAGGCCTCCTCCCAGTAAGGCT GGTCCTACTCCTCCACCTCCCCCTCCTGCACCACCTGCGCCTGCAAAATCATCCAGTAGTACGGGCCCTCGCCCCCCTGGTCCACCTCCTCCACCACCTA TTGCTCCTAGAGTGAAACCTGGTCCACGCACTCTACCACCTCCAATTGGAGGTTCTGCTCCTCGACCACCTCCACCAATGCCCTCAGGTCCAAAAGTTCC TCGACCACCTCTTGGATCAAAGCATCCTTCCAATACTGCATCCAGTGAAGGAGCTGGTATGGAGGATGATGCTGATGCTCCTAAAGCCAAGTTAAAGCCA TTTTTCTGGGACAAAGTTCTAGCCAACCCTGATCATTCCATGGTTTGGCATCAGATTAAATCGGGATCATTCCAGTTCAATGAGGAGATGATAGAAACCC TGTTTGGATATGCACCTGATAAAAACAAAAATGAACGCAAGAAAGAGTCTTCTTCCCAAGATCCAACACCCCATTTTATTCAAATACTTGATCCCAAAAA GGCACAAAATTTATCAATTCTTTTGCGGGCACTGAATGTGACGATAGAAGAAGTCTGTGATGCACTTCGTGAAGGAAATGAGCTTCCTGTAGAGCTCGTT CAAAATTTGTTGAGGATGGCACCCACAGCAGATGAAGAACTGAAGCTTAGGCTCTACAGTGGTGAACTTTCTCAACTTGGGCCTGCTGAGAGGTTCCTAA AAGCATTGGTTGACATCCCATTTGCTTTTAAACGACTGGAAGCACTTCTTTTCATGTGCACTCTACAGGAAGAGATCACCTCCAGTAAAGAGTCTTTTGA AACCTTAGAGGTTGCTTGCAAGGAGCTCAGAAACAGTCGATTGTTCCTCAAGCTTCTAGAAGCTGTTCTCAAAACAGGCAACCGAATGAATGATGGAACA TTCCGTGGTGGTGCACAAGCATTCAAGCTTGACACACTTTTGAAATTATCTGATGTAAAAGGAGTAGATGGGAAGACTACTCTCTTGCACTTTGTTGTTC AGGAGATAGTTCGCTCTGAAGGTGTGAGAGCTGCTCGTGCAGGACGAGAGAGCCGGAGCCTTTCCAGTGTCAGTATAAAAACAGATGATCTCCTTGAGGA AATTTCCACCGATACAGAAGAGCACTATTGCAACCTTGGTCTTCAGGTTGTTTCTCATTTGAGCAGTGAACTAGAAAATGTCAAAAGAGCAGCGGTCGTG GATACTGACAACTTAACAAGATCTGCTGCTAAACTTGGGCAGTCATTGTTAGTAACCCAAAATTTCCTGAATAAAGACATGAAGAATTTAGAGGAAGATA GTGGATTCCATCAAACATTGAAAGGTTTTGTGCAGAATGCTGAGGTTGATGTCATGTCACTTCTGGAAGAAGAAAAGAGAATTATGGCTCTGGTGAAGAG CACTGGTGATTATTTCCATGGGAATGCAGGGAAGGATGAGGGCTTACGATTATTTGTCATTGTACGAGACTTTTTAATAATATTAGATAAGGTATGCAAA GAGGTGAGAGAGGCACAAAAGAGGTTAGCAAAAACACAGAAAAAAGAGGCATCTACTGTATCATCTCCCTCTAATCAGCGCCAGCAACTGTTGGCTGATC TTCGCCAGCGGCTATTTCCAGCAATTGCAGAGCGACGTACAGAAGATTCCAGTTCCAGCTCGGATGACGATGGTTAA
AA sequence Show only first row Show all	>Potri.001G416100.4 pacid=42787683 polypeptide=Potri.001G416100.4.p locus=Potri.001G416100 ID=Potri.001G416100.4.v4.1 annot-version=v4.1 MLIRMNHQPMVHMKSNCSSFLVILLCASVVVSLEYRGRTEEVFLRQLDDPATGYVDKDAAELLCIICKVDLIQLKEADENLNFCFPEETFNGASELRSKG WSVSKENIQKLIKVPQPQLKETLLDCIRKDNHLFHVSGDEGGADNYHTRRAVARRNLLQIISEPPAPVPVVGSPFPSPSPSPDLAPSPASTPNSIPSPQE PFFPHLTPPPPSPSENSSSSQTSGPIEPDNGNNHKTVVIAVVVTAGVTFVVAALFFLLCTKVCWRGPGARRNDERPLLSLSLSDYSVGSTHKTFGLGNSI EQEKLGHHSFGNISSHEKMGSSLESLFNKSDALNVSLDESMSLGAVSAAAKSSGDSKMNTPVPHPPGGTGSNPFLKPPPGRAEPLPPEPPASLRPPPSKA GPTPPPPPPAPPAPAKSSSSTGPRPPGPPPPPPIAPRVKPGPRTLPPPIGGSAPRPPPPMPSGPKVPRPPLGSKHPSNTASSEGAGMEDDADAPKAKLKP FFWDKVLANPDHSMVWHQIKSGSFQFNEEMIETLFGYAPDKNKNERKKESSSQDPTPHFIQILDPKKAQNLSILLRALNVTIEEVCDALREGNELPVELV QNLLRMAPTADEELKLRLYSGELSQLGPAERFLKALVDIPFAFKRLEALLFMCTLQEEITSSKESFETLEVACKELRNSRLFLKLLEAVLKTGNRMNDGT FRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIVRSEGVRAARAGRESRSLSSVSIKTDDLLEEISTDTEEHYCNLGLQVVSHLSSELENVKRAAVV DTDNLTRSAAKLGQSLLVTQNFLNKDMKNLEEDSGFHQTLKGFVQNAEVDVMSLLEEEKRIMALVKSTGDYFHGNAGKDEGLRLFVIVRDFLIILDKVCK EVREAQKRLAKTQKKEASTVSSPSNQRQQLLADLRQRLFPAIAERRTEDSSSSSDDDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	0	1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074700 [exp]	1.41	0.8516
AT4G00090			Transducin/WD40 repeat-like su...		Potri.014G069400 [exp]	3.74	0.8145
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	4.00	0.8599
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	7.34	0.8096
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.008G060700 [exp]	10.39	0.7987
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	12.00	0.8195
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	12.44	0.8197	CALS1.4
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	15.96	0.7994
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.011G042400 [exp]	16.12	0.8021	FBL6
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	24.81	0.7943

Compare expression of checked genes

Potri.001G416100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.