Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01440 230 / 2e-76 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT4G21280 70 / 3e-14 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT4G05180 64 / 4e-12 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT1G14150 54 / 1e-08 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031500 [exp] 60 / 1e-10 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.011G031300 [exp] 59 / 3e-10 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035839 [exp] 198 / 7e-64 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10036622 [exp] 196 / 4e-63 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10007627 [exp] 61 / 5e-11 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 60 / 9e-11 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 59 / 3e-10 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 54 / 2e-08 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [poplar] [flax] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Potri.001G416400.1 pacid=42790858 polypeptide=Potri.001G416400.1.p locus=Potri.001G416400 ID=Potri.001G416400.1.v4.1 annot-version=v4.1 ATGGCTCATTTAACAAACTTAAATGGAGTCACTGAGACCCTGCCAGCCATACCAAAACTTATCAACGTGCAGAAACCTCAAAGAAGGATGAAAATAACTG GATTGCTAGGCAAGAAGCCGGTTAATCTTCAAGGGAATTCATTTCAAACTACAAGAAGACTAGCTTTAGGCCTTGCTTCAATAGCTCTCATTGGAAATCC CAGTACCGGTGTCTCTCTCGCGGAGGATAATTGGTGGGCTCGTGATATCCCCTTGCCCGTGCCTTCTGCAGAGAACAAACTTGCAAATGAGGAGACAGGC ACACGTTCTTTTCTGAAGAAGGGAATTTATATGGCAAATGTTGGATTACAAGGTAGCGCACGTAGGGTAAAGAGATATGCCTTTGATCTCTTAGCTCTGG AGGATTTGATAGGACCAGACACCCTGAATTATGTCAGGAAGTACTTGAGAATCAAGTCCACTTTCATGTACTATGATTTGGACAGGATTATCTCTGCAGT TCCTGTAGATGACAAGCAACCTCTTACTGATCTGGCTAACAGATTGTTTGACAACTTTGAAAAGCTTGAAGATGCATCGAGGAGGAAAAACCTGTCTGAT ACAAAATCAAGTTATCGAGACACAAAAGCACTTTTGCAAGAGGTCATGCAACAGAATCCAGTTGATCTGAAGAGTAAATTTACCTATTACCCGGATGGAC TTCAAAGCTAG
AA sequence Show only first row Show all	>Potri.001G416400.1 pacid=42790858 polypeptide=Potri.001G416400.1.p locus=Potri.001G416400 ID=Potri.001G416400.1.v4.1 annot-version=v4.1 MAHLTNLNGVTETLPAIPKLINVQKPQRRMKITGLLGKKPVNLQGNSFQTTRRLALGLASIALIGNPSTGVSLAEDNWWARDIPLPVPSAENKLANEETG TRSFLKKGIYMANVGLQGSARRVKRYAFDLLALEDLIGPDTLNYVRKYLRIKSTFMYYDLDRIISAVPVDDKQPLTDLANRLFDNFEKLEDASRRKNLSD TKSSYRDTKALLQEVMQQNPVDLKSKFTYYPDGLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Potri.001G416400 [exp]	0	1
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	1.73	0.9838
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	2.00	0.9818	Pt-SIGB.2
AT5G52030			TraB family protein (.1.2)		Potri.012G133900 [exp]	2.82	0.9763
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.013G148900 [exp]	3.00	0.9803	Pt-PETC.2
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G085900 [exp]	4.47	0.9686
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Potri.006G060100 [exp]	6.32	0.9761
AT4G21445			unknown protein		Potri.004G033400 [exp]	9.38	0.9746
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	9.53	0.9749
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	10.00	0.9734
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	11.48	0.9751	TMP14.1

Compare expression of checked genes

Potri.001G416400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.