Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54690 851 / 0 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT5G15470 585 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT3G01040 583 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT3G58790 363 / 9e-120 GAUT15 galacturonosyltransferase 15 (.1) AT5G47780 323 / 2e-103 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 319 / 4e-101 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT3G25140 313 / 6e-100 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 311 / 2e-99 GAUT11 galacturonosyltransferase 11 (.1) AT3G02350 303 / 3e-96 GAUT9 galacturonosyltransferase 9 (.1) AT4G38270 305 / 9e-96 GAUT3 galacturonosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132600 [exp] 936 / 0 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.004G124500 [exp] 587 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.017G090800 [exp] 572 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.014G142000 [exp] 387 / 3e-129 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.006G001100 [exp] 329 / 5e-106 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.016G001700 [exp] 328 / 5e-105 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 321 / 3e-103 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G206000 [exp] 310 / 1e-97 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.008G010000 [exp] 307 / 1e-96 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035836 [exp] 867 / 0 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10036619 [exp] 593 / 0 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10032990 [exp] 555 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10013189 [exp] 540 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10030703 [exp] 516 / 9e-180 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10015379 [exp] 518 / 3e-176 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10038739 [exp] 327 / 2e-104 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10003045 [exp] 312 / 9e-100 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10009311 [exp] 310 / 7e-98 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10011834 [exp] 303 / 3e-96 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.001G416800.1 pacid=42791116 polypeptide=Potri.001G416800.1.p locus=Potri.001G416800 ID=Potri.001G416800.1.v4.1 annot-version=v4.1 ATGCAGCTTCATATATCGCCGAGTTTGAGGCATGTTACAGTTTTTCCTGGAAAAGGTGTCAGAGAGTTTATCAAAGTGAGGGTTGGAGCTAGAAGGGTTT CTTATCGAATGCTCTTCTATTCTCTCTTGTTCTTCACGTTTCTTCTCCGGTTTGTGTTCGTTTTGTCCACAGTTGACTCCATTGATGGAGAAACCAAGTG CTCTACACTAGGCTGCTTGGGGAAAAGACTAGGGCCAAGGATATTGGGGAGAAGGCTTGACTCGGCTGTACCAGAGGTTATGTTTCAAGTGCTAGAACAA CCACTTGGCAATGATGAATTAAAGGGAAGGAGTGATATTCCTCAAACATTAGAGGAATTTATGGACGAAGTCAAGAACACAAGATTAGACGCGAAAACTT TTGCTCTCAAGCTCAGAGAAATGGTCACTCTACTCGAACAAAGGACTAGAAATGCCAAAATCCAAGAATATCTGTACAGGCATGTAGCATCAAGTAGCAT ACCGAAGCAGCTTCATTGCCTTGCCTTGAGGCTAGCCAGTGAGCACTCCACTAATGCAGCTGCTCGACTTCAGCTCCCCTTGCCGGAACTCGTCCCTGCG CTTGTTGACAATACTTATTTTCACTTTGTCCTGGCTTCAGACAATGTGCTTGCTGCTGCTGTTGTTGCCAATTCACTTGTCCAAAATGCGTTGCGCCCCC AGAAGTTTGTGCTGCACATAATAACAGATAGGAAAACTTATTCACCTATGCAAGCATGGTTCTCACTGCACCCTTTGGCTCCGGCAATAATTGAGGTCAA GGCATTGCATCATTTCGATTGGTTCGCAAAGGGGAAAGTGCCAGTCATGGAAGCAATGGAAAAGGATCAGAGGGTGAGGTCACAGTTTAGAGGGGGTTCA TCTGCAATTGTAGCAAATAACACCGAGAAGCCTCATATTATCGCAGCAAAACTACAAACACTTAGTCCCAAATACAATTCAGTGATGAATCACATCCGAA TTCATCTACCTGAGTTGTTCCCAAGCCTAAACAAGGTTGTGTTCCTAGACGATGACATAGTGGTGCAGTCCGATCTTTCGCCTCTCTGGGACATTGACAT GAATGGAAAGGTTAACGGGGCAGTAGAAACCTGTCGAGGAGAAGACAAGTTTGTCATGTCAAAGAAGTTGAAGAGCTATTTGAACTTCTCTCATCCCTTG ATATCAGAAAATTTCAAGCCGAACGAATGTGCCTGGGCTTATGGCATGAACATATTTGATTTAGAGGCTTGGAGGAAAACCAACATAAGCACAACATACC ATCACTGGGTTGAAGAGAACTTGAAATCAGACCTGAGCTTGTGGCAGCTAGGAACACTACCTCCAGGTCTGATAGCATTCCATGGCCACGTCCACGTTAT CGATCCCTTTTGGCACATGTTGGGTCTAGGCTACCAAGAAAATACAAGTTTGGCAGATGCTGAGACTGCCGGCGTCATCCATTTCAATGGTCGAGCAAAG CCTTGGCTAGATATAGCATTCCCTCAGCTCCGCCCCCTGTGGGCTAAGTACATCAACTTTTCTGACAAGTTCATAAAGGGCTGTCATATTAGGCCATCTT AA
AA sequence Show only first row Show all	>Potri.001G416800.1 pacid=42791116 polypeptide=Potri.001G416800.1.p locus=Potri.001G416800 ID=Potri.001G416800.1.v4.1 annot-version=v4.1 MQLHISPSLRHVTVFPGKGVREFIKVRVGARRVSYRMLFYSLLFFTFLLRFVFVLSTVDSIDGETKCSTLGCLGKRLGPRILGRRLDSAVPEVMFQVLEQ PLGNDELKGRSDIPQTLEEFMDEVKNTRLDAKTFALKLREMVTLLEQRTRNAKIQEYLYRHVASSSIPKQLHCLALRLASEHSTNAAARLQLPLPELVPA LVDNTYFHFVLASDNVLAAAVVANSLVQNALRPQKFVLHIITDRKTYSPMQAWFSLHPLAPAIIEVKALHHFDWFAKGKVPVMEAMEKDQRVRSQFRGGS SAIVANNTEKPHIIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQSDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPL ISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAK PWLDIAFPQLRPLWAKYINFSDKFIKGCHIRPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.014G095800 [exp]	1.73	0.9323
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	4.00	0.9270
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	4.47	0.9342
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	4.89	0.9330
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	6.48	0.9098	FAH1.3
AT5G42710			unknown protein		Potri.014G185300 [exp]	9.00	0.9072
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Potri.010G125200 [exp]	9.16	0.8925	HMT4
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	9.74	0.9234	SHMT3
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	9.89	0.9033
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G034000 [exp]	10.39	0.8950

Compare expression of checked genes

Potri.001G416800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.