Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54730 500 / 3e-165 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G54710 429 / 5e-136 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 428 / 4e-135 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132700 [exp] 1360 / 0 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.005G040300 [exp] 463 / 2e-148 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.013G028200 [exp] 459 / 5e-147 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035835 [exp] 823 / 0 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 800 / 0 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10018960 [exp] 478 / 1e-153 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 428 / 2e-135 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 421 / 2e-135 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 427 / 3e-134 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033818 [exp] 56 / 5e-08 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12490 [poplar] [flax] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Potri.001G417000.1 pacid=42787811 polypeptide=Potri.001G417000.1.p locus=Potri.001G417000 ID=Potri.001G417000.1.v4.1 annot-version=v4.1 ATGAGGAAGAGTATTATTAGCAATGATGTTCAACAACAGCAGCAGAAGAATTTGCAGGGGAGAGTTAATGGTAATAAAAATGGGTTTTTGCCGAGCTCGT TTCGGGCGATTTCGAGTTATTTGAGGATTGTTTCATCTGGTGCATCGACGGTTGCCAGGTCTGCCGCATCGGTTGCTCAGTCTATTGTGGATAGGGACGA TGATGCCAATCACGACCAGGTTCGCTGGGCTGGGTTTGACAAGTTAGAAGGTGATGATGATGTCATTCGGCACGTCCTCTTGTTGGGATATCAGTCTGGT TTCGAGGTTTGGGATGTTGAAGAAGCTAATAATGTCCGTGACCTTGTTTCCAGACATGATGGCCCTGTGTCATTCTTACAAATGCTGCCAAAACCAGTAA CATCAGAGGGATCACAAGACAAGTTTGCATACAACAGACCTCTTTTAGTGGTTTGTTCTGATGGGGCACAAGATGGGCCGGCTACTTCATGCAACGGGAA TGTCTCTAACAACAATTATCCTGTTAATGGTAGCACTGTGCCAACTGTTGTCCGGTTTTATTCTCTTAGATCTCAATCTTATGTACATGTGCTAAAGTTC AGATCAGCTGTTTATTCTGTAAGGTGCAGCTCTAGAATTGTGGCTATTTCTCAATCAGCTCAGATACACTGTTTTAATGCAACAACATTAGAGAGGGAAT ATACTATTCTTACAAACCCTATGGTCATGGGGTCTCCTGCTTCTGGGGGTATAGGCTATGGGCCTCTTGCAGTTGGTCCCAGGTGGCTGGCTTACAGTGG AAGTCCAGTTGTTGTTTCCAATTCTGGATGCATTAACCCGCAGCATCTAACATCTTCTATGAGTTTTTCTGGTTTCACTTCAAATGGAAGTTTGGTTGCT CATTATGCAAAGGAATCAAGCAAACAACTTGCCGCTGGAATTGTGACCCTAGGAGACATGGGATATAAGAAGTTGTCCAGCTATTGCTCGGAGCTCCTTC CCGATTCTCATGGTTCCCTCCAATCAGGGAATCCTGGCTGGAAAAGCAATGGAACTGTTAATGGCCATTTTCCTGATGCAGATAACATTGGAATGGTTGT TGTCAGGGATATTGTTAGTAAACTTGTTATTGCCCAGTTTAGAGCTCACAAGAGTCCAATCTCAGCATTGTGCTTTGATTCTAGTGGGACGCTTTTAGTG ACCGCCTCAATCCAGGGTCATAACATTAATGTTTTCAAAATAATGCCTGGACTCCAAGGAAGCTCTTCTACTGGTGCATCTTATGTACACCTGTACAGGC TGCAGCGTGGATTTACAAATGCAGTTATACAGGACATCAGTTTCAGTGATGACAGCTCCTGGATTATGATAAGTTCATCAAGGGGGACAAGCCATTTATT TGCTATTAATCCATTGGGAGGAACAGTGAACTTTCAATCTTCTGAATCTAGTTATGTCTCAAAACATAGTGGTTTGGGAGGAATGAATAAGCCAACTGTT AGTTGCCCTCCCTGTTTAGGTTTACAAATGCATAATCAACAGAGCCTTTGTGCAACTGGCCGCGCAGTTACACTATCTGCTGTCAGCAGAATAAGAAATG GAAATAATGGTTGGAGAGGCACCGTAACTGGTGCAGCAGCGGCTGCTACAGGCAGACTGGGATCCCTTTCTGGTGCTATTGCCTCATCTTTTCACAAATG CAAAGGAAATAATGATATGTATGGGGATGGGACCTCTTTCAAGTCAAAGTACCATCTTCTAGTGTTCTCTTCTTCTGGTTCTATGATACAGTATACTTTG AGGATATTGGATGGCATTGATTCAACACCAGTCGGGTCTGGACTTAATGTAAATTATGAGTCAGCTGCAGAAAATGAAGGAAGATTAGTAGTTGAGGCAA TGCAGAAGTGGAATATATGTCAGAAACAAAATCGAAGAGATCGAGAAGATAATGTTGATATATATGGTGACAATGGGAATTCTGACAGCAACAAGATACA TCCTGAAGGCATAAAGAAAGGAAATAGCATTTATCCTGAAGTTAGAGGTGCAGTCACAAATACAAAGATCAGTCCGGAGGAAAAGCATCATTTGTATATT TCAGAAGCTGAACTGCAAATGCATCAAGCTTGTTTCCCATTATGGGCAAAACCTGAGATATACTTCCAATCAATGATGACAGAGGGAATAGATGTGAATG ATGCAGATGCAATGCAAGGGGAAATTGAGATTGAAAGAATTCCAGCTCGCATGATTGAAGCAAGGTCAAAAGACTTGGTCCCACTTTTTGACTATCTCCA AACACCAAAATTTCCACATTCAAGGGTTCCGTCCTTAGATAGCAATAGTAATGGGAGTCTGCAGCATCAAAGTTCCGGGCTGTCTGAAAATGGCAGGCTT TCTTGCAGGAGCAGCTCTGGCTCCCTTGACTCCATGGCTGAGAATGGTGCTGCAGTGGCTGAACTTCGCAATGGTATTGAAGAAACTGGGTGGAATGGTT CTAGGATGCCTGTAGAAACTAGGGGCTTTGTAGATAGCAATGGCAGTCCTAAAACAAATACTGAGGTTGTAAATAGTAGAGAGAGCTCTAGAATGGAGGC TCAACTCAAGTTTGTAAATAGTAACAACAAAGGCCTGAAAATTGAGAATCATTTCGAAGATGAAGGTGATGAATTTGATTAG
AA sequence Show only first row Show all	>Potri.001G417000.1 pacid=42787811 polypeptide=Potri.001G417000.1.p locus=Potri.001G417000 ID=Potri.001G417000.1.v4.1 annot-version=v4.1 MRKSIISNDVQQQQQKNLQGRVNGNKNGFLPSSFRAISSYLRIVSSGASTVARSAASVAQSIVDRDDDANHDQVRWAGFDKLEGDDDVIRHVLLLGYQSG FEVWDVEEANNVRDLVSRHDGPVSFLQMLPKPVTSEGSQDKFAYNRPLLVVCSDGAQDGPATSCNGNVSNNNYPVNGSTVPTVVRFYSLRSQSYVHVLKF RSAVYSVRCSSRIVAISQSAQIHCFNATTLEREYTILTNPMVMGSPASGGIGYGPLAVGPRWLAYSGSPVVVSNSGCINPQHLTSSMSFSGFTSNGSLVA HYAKESSKQLAAGIVTLGDMGYKKLSSYCSELLPDSHGSLQSGNPGWKSNGTVNGHFPDADNIGMVVVRDIVSKLVIAQFRAHKSPISALCFDSSGTLLV TASIQGHNINVFKIMPGLQGSSSTGASYVHLYRLQRGFTNAVIQDISFSDDSSWIMISSSRGTSHLFAINPLGGTVNFQSSESSYVSKHSGLGGMNKPTV SCPPCLGLQMHNQQSLCATGRAVTLSAVSRIRNGNNGWRGTVTGAAAAATGRLGSLSGAIASSFHKCKGNNDMYGDGTSFKSKYHLLVFSSSGSMIQYTL RILDGIDSTPVGSGLNVNYESAAENEGRLVVEAMQKWNICQKQNRRDREDNVDIYGDNGNSDSNKIHPEGIKKGNSIYPEVRGAVTNTKISPEEKHHLYI SEAELQMHQACFPLWAKPEIYFQSMMTEGIDVNDADAMQGEIEIERIPARMIEARSKDLVPLFDYLQTPKFPHSRVPSLDSNSNGSLQHQSSGLSENGRL SCRSSSGSLDSMAENGAAVAELRNGIEETGWNGSRMPVETRGFVDSNGSPKTNTEVVNSRESSRMEAQLKFVNSNNKGLKIENHFEDEGDEFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.001G417000 [exp]	0	1
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	1.00	0.8759
AT2G25660		EMB2410	embryo defective 2410 (.1)		Potri.018G034700 [exp]	10.58	0.7225
AT1G02290			unknown protein		Potri.002G184000 [exp]	14.66	0.7117
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	24.00	0.7183
AT2G37840			Protein kinase superfamily pro...		Potri.016G104900 [exp]	24.73	0.6982
AT4G15840			BTB/POZ domain-containing prot...		Potri.010G014000 [exp]	25.69	0.7100
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	26.19	0.7039
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128900 [exp]	36.66	0.6665
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.001G206700 [exp]	38.06	0.6447
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Potri.002G009700 [exp]	47.81	0.7011

Compare expression of checked genes

Potri.001G417000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.