Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20720 1456 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132800 [exp] 2009 / 0 AT3G20720 1468 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043072 [exp] 1394 / 0 AT3G20720 1376 / 0.0 unknown protein Lus10011166 [exp] 1341 / 0 AT3G20720 1336 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G417200.3 pacid=42793212 polypeptide=Potri.001G417200.3.p locus=Potri.001G417200 ID=Potri.001G417200.3.v4.1 annot-version=v4.1 ATGGAGGCGATACTGGCATGCGCGTTAGAGTACACGCTCAAGTACTGGCTCAAATCTTTCTCTAGAGACCAGTTTAAGCTTCAAGGCCGGACAGTGCAAC TTTCTAATTTAGAAATAAATGGAGACGCTTTGCACGCGAGTATGGGATTGCCGCCGGCGCTGAATGTAACAAAGGCGAAAGTAGGCAAATTCGAGATAAT TCTTCCGTATGTAAGTTATGTACAAGTAGAACCGATTGTTATTCAAATTGATAAGCTCGATTTGGTCTTAGAGGAGAATAGTGATTTAGATGGGAGCAGC AGTCCCAACAGTTCACAATTGTCTGGTGATTCCAGCAAGAGTAGCGGTTATGGATTTGCTGATAAGATTGCAGATGGAATGACCATTCAGATTACCACTG TTAATCTTCTACTTGAAACACGTGGGGGTGTTCAACGTGGGGGAGGGGCTGCCTGGGCTTCACCACTGGCATCAATTACTATACACAACCTTTTATTGTA TACCACAAATGAAAACTGGCAGGTAGTAAACCTTAAGGAAGCACGTGACTTCTCCACTAACAAAAAGTTCATATATGCATTCAAGAAACTTGAATGGGAA TCTTTATCTGTTGATCTCCTGCCTCATCCTGATATGTTCACCGATGCCAGTTTAGCTCGTGCTGAGGAGGGAGCCTCCCAGAGAGATGATGATGGTGCAA AGCGAGTTTTCTTTGGGGGAGAACGTTTTCTGGAAGGAATATCTGGAGAGGCTTATATCACAATTCAGAGAACTGAACTAAACAGTCCACTAGGGCTTGA GGTTCAGTTACATATTCCAGAAGCCGTCTGTCCTGCATTGAGTGAACCAGGACTACGTGCTCTTCTTCGCTTCATGACTGGGTTATATGTGTGTCTTAAT AGAGGAGATGTGGGTCTACAGGCTCAGCAGCGATCTACAGAAGCAGCAGGATGTTCTCTAGTCTCAATTGTTGTTGACCACATATTTCTCCGCATCAAAG ATGCTGAGTTCCAGCTTGAACTTTTGATGCAGTCTCTCCTTTTTTCCCGGGCCACAGTATCTGATGGAAAAATTGCCAATAATCTGACAAAGGTTATGCT TGGTGGAATGTTCTTGAGGGACACCTTCTCACGCCCTCCTTGCACTTTACTGCAACCATCCCTGCAAGCTATCACAAAACATGTTGCACGGATTCCTGAT TTTGCAAAGGATTTTTGCCCTCCTATATATCCTCTGGGAGACCACCAGTGGCAGAAAAGTGTTGGTATTCCTTTGATATGCCTCCACTCTCTTCAGGCTA AGCCCTCTCCAGTCCCACCATGTTTTGCTTCACAAACAGTTATCACATGTCAGCCTCTTATGATTCACCTTCAAGAAGAATCATGTTTGAGGATATCTTC CTTCTTAGCTGATGGCATTGTTATCAATCCTGGGGATGTGTTACCTGATTTTTCAGTAAATTCCTTGGTATTTGTTCTCAAGGAATTAGATGTTATTGTT CCGTTGGATGTGAGTCAATCAAACAACCCAACTGAAAATGGAAACTCTACTTTTCACAATGTGTTTGCTGGAGCAAGGCTTCGCATTGAAAATTTGTTCT TCTCAGAGTCGCCAACACTAAAACTCAGGCTACTGAAGCTGGAGAAGGATCCTGCTTGCTTTTATCTCTGGGAGGGACAACCAATTGATGCTAGCCAGAA AAAATGGACTACTGGAGCATCGCACCTTACACTGTCTCTGGAAACATCTACCAACTTAAATGGGACACCAAGTTCCAATGGGATGAGCTCAGGCTCATGG AGATGCATTGAACTACAAGATGCTTCTGTGGAAGTTGCCATGATATCGGCTGATGGGAGTCCATTAACAAATGTTCCTCCCCCTGGTGGTATTGTCAGAG TTGGAGTTGCTTGTCAACAATATCTTTCCAACACTTCTGTTGAGCAGCTATTCTTTGTCCTTGATCTTTATGCATATTTTGGCAGGGTTTGTGAAAAGAT TGTCTCAGTTGGCAAGGATAAGAGACCAAAGATAACTAGGAATGGATCTTCTGGTGTTAGGCTAATGGATAAGGTTCCCTGTGACACTGCAGTAAGCTTA GCAGTGAAGGAACTACGACTTCGATTTTTAGAATCTTCTGCCTCAGATATTGAGGGAATGCCTTTGGTTCAATTTATTGGGGAAGATCTTTACATAAAAG TTTCTCATAGAACCCTTGGTGGTGCCATTGTTATTTCATCCTCTGTATACTGGCAGAGTGTTGAGGTGGACTGTGTAGAGACCGAGGGAAGCTTGGCACA TGAAAATGGCATGCTGACAAGTTCCGTTGAAAATGGTCGTCTTGTAACTGCGAATGGATACCCTCAACTAAGAGCTGTGTTTTGGGTGCATAATGGACAG AAATACCAAGCAAATGGTATTGCTTGTACAATCCCATTTCTAGACACAAGCATGGTACACATGATTCCATTAAGCGAACAGGATCAAGAGTGCCATAGTT TAAGTGTTTCTGCCTGTATATCTGGTGTCCGCCTGGGTGGAGGAATGAACCATGCTGAAGCTCTACTCCATCGGTTTGGAATATTGGGGCCCGATGGTGG TCCAGGGGAGGGGCTTTCTAAAGGGCTAGAAAATTTATCAACTGGGCCACTTTCTAAACTTTTTAAAGGGTCCCCTCTTATTGATAATCTAAAAGAAGAT GGAAGTTTAATAGATGGCAAAGATGGAGTTTTACACCTCAGATTGCCAGATGATGTGGATGTGTGCATAGAATTAAAAGACTGGTTATTTGCTCTTGAAG GTGCACAGGAGATGGCAGGTGGGTGGTTCTTTTACAACAACGAAGATGTGGGAAGAGAAGAGAGGTGTTGGCACGCATCTTTCCAAAGTTTGCAGTTAAA AGCGAAAAGTAGTCCGAAGATAGAGTTGAATGGAAAAGAAAAACCAAATGGAAAACTGAAATATCCTGTGGAATTAGTTACAGTTGGTGTGGAAGGTTTG CAGACATTGAAGCCACAGGGACAAAAGGGCATTTCTACTCCTGCAAATGGGATAAAGGAAGTTGTGGAGACATCTGGAGGAATCAATCTTGAAGTTCGGA TGGTGGCATCGGAGGAAAACATTGATGACGAGATGGCCAAGTGGGCTGTGGAAAACTTGAAATTTTCTGTCAAGCAACCAATTGAGGCTGTTGTGACCAA AGATGAGTTCCAGCACCTTGCTTTGTTGTGCAAGTCAGAAGTTGATGCGATGGGTCGGATAGCTGCTGGTTTCCTGAGGCTACTCAAGTTTGAACGGTCA ATTGGCCAGTCAGCCATAGATCAACTTAGCAACCTTGGAAGTGAGGGCTTTGACAAGATTTTCACCCCAGACAGGCTCAGCAGGGGTGCTAGTCCTGCCA GCATTGCTTTCTCTCCGTCATCGTATCTGGTTAATGAAAGCCCACAAACAACCATGGAATCAACAGTAACTTCCCTCAAGGAAGCACTTTTGGATTCACA GGCCAAATTGGCTGCCCTTATTACTGATTTATCCATTTCAGAATCCTCTATACAGCATCTTGCTGATATTAAACAACTAAGTCAGAAGCTTGAAATCATG CAGAGTTTGGTGATGCAATTACAGACCAAAATCTGA
AA sequence Show only first row Show all	>Potri.001G417200.3 pacid=42793212 polypeptide=Potri.001G417200.3.p locus=Potri.001G417200 ID=Potri.001G417200.3.v4.1 annot-version=v4.1 MEAILACALEYTLKYWLKSFSRDQFKLQGRTVQLSNLEINGDALHASMGLPPALNVTKAKVGKFEIILPYVSYVQVEPIVIQIDKLDLVLEENSDLDGSS SPNSSQLSGDSSKSSGYGFADKIADGMTIQITTVNLLLETRGGVQRGGGAAWASPLASITIHNLLLYTTNENWQVVNLKEARDFSTNKKFIYAFKKLEWE SLSVDLLPHPDMFTDASLARAEEGASQRDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLEVQLHIPEAVCPALSEPGLRALLRFMTGLYVCLN RGDVGLQAQQRSTEAAGCSLVSIVVDHIFLRIKDAEFQLELLMQSLLFSRATVSDGKIANNLTKVMLGGMFLRDTFSRPPCTLLQPSLQAITKHVARIPD FAKDFCPPIYPLGDHQWQKSVGIPLICLHSLQAKPSPVPPCFASQTVITCQPLMIHLQEESCLRISSFLADGIVINPGDVLPDFSVNSLVFVLKELDVIV PLDVSQSNNPTENGNSTFHNVFAGARLRIENLFFSESPTLKLRLLKLEKDPACFYLWEGQPIDASQKKWTTGASHLTLSLETSTNLNGTPSSNGMSSGSW RCIELQDASVEVAMISADGSPLTNVPPPGGIVRVGVACQQYLSNTSVEQLFFVLDLYAYFGRVCEKIVSVGKDKRPKITRNGSSGVRLMDKVPCDTAVSL AVKELRLRFLESSASDIEGMPLVQFIGEDLYIKVSHRTLGGAIVISSSVYWQSVEVDCVETEGSLAHENGMLTSSVENGRLVTANGYPQLRAVFWVHNGQ KYQANGIACTIPFLDTSMVHMIPLSEQDQECHSLSVSACISGVRLGGGMNHAEALLHRFGILGPDGGPGEGLSKGLENLSTGPLSKLFKGSPLIDNLKED GSLIDGKDGVLHLRLPDDVDVCIELKDWLFALEGAQEMAGGWFFYNNEDVGREERCWHASFQSLQLKAKSSPKIELNGKEKPNGKLKYPVELVTVGVEGL QTLKPQGQKGISTPANGIKEVVETSGGINLEVRMVASEENIDDEMAKWAVENLKFSVKQPIEAVVTKDEFQHLALLCKSEVDAMGRIAAGFLRLLKFERS IGQSAIDQLSNLGSEGFDKIFTPDRLSRGASPASIAFSPSSYLVNESPQTTMESTVTSLKEALLDSQAKLAALITDLSISESSIQHLADIKQLSQKLEIM QSLVMQLQTKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20720			unknown protein		Potri.001G417200 [exp]	0	1
AT2G45670			calcineurin B subunit-related ...		Potri.014G074300 [exp]	1.00	0.8201
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.001G197600 [exp]	4.89	0.8194
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	5.65	0.7937
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	8.66	0.6926
AT2G32970			unknown protein		Potri.002G224900 [exp]	10.48	0.7619
AT1G22060			unknown protein		Potri.005G170066 [exp]	12.84	0.7738
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Potri.014G145400 [exp]	14.17	0.6987
AT1G04200			unknown protein		Potri.010G081800 [exp]	17.97	0.7453
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	20.19	0.7678
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	21.49	0.7612

Compare expression of checked genes

Potri.001G417200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.