Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FIE.1,PGE901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20740 619 / 0 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) AT1G79990 64 / 6e-11 structural molecules (.1.2.3.4.5) AT1G52360 62 / 3e-10 Coatomer, beta' subunit (.1.2) AT3G15980 62 / 4e-10 Coatomer, beta' subunit (.1.2.3.4.5) AT1G62020 60 / 2e-09 Coatomer, alpha subunit (.1) AT2G21390 59 / 4e-09 Coatomer, alpha subunit (.1) AT1G48630 54 / 5e-08 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G11160 54 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 54 / 1e-07 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G18130 53 / 1e-07 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250200 [exp] 61 / 6e-10 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 61 / 8e-10 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 59 / 2e-09 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.015G069700 [exp] 57 / 2e-08 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 57 / 2e-08 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.007G009500 [exp] 56 / 2e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 54 / 9e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 51 / 7e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G184900 [exp] 51 / 9e-07 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043071 [exp] 697 / 0 AT3G20740 597 / 0.0 FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011165 [exp] 621 / 0 AT3G20740 526 / 0.0 FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037525 [exp] 64 / 3e-11 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10033092 [exp] 65 / 4e-11 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 63 / 2e-10 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 61 / 3e-10 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 61 / 3e-10 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10016481 [exp] 57 / 2e-08 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 57 / 2e-08 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 57 / 2e-08 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G417300.1 pacid=42791216 polypeptide=Potri.001G417300.1.p locus=Potri.001G417300 ID=Potri.001G417300.1.v4.1 annot-version=v4.1 ATGGCAAAAATCGCGTTAGGCTGCGAGCCAGTAGTAGGGTCACTAACCCCATCAAAGAAGAGAGAGTATAGACTCACCAACAGACTCCAAGAAGGCAAAA GGCCTTTATATGCTGTTGTTTTTAACTTCATCGACTCGCGCTACTTCAATGTCTTTGCCACTGTCGGTGGCAACCGGGTGACTGTTTATCAATGTCTTGA TGAGGGAGTTATAGCAGTATTGCAGTCTTATGTTGATGAAGATAAGGATGAGTCTTTTTATACGGTGAGCTGGGCATGCAACATTGATGGTGCACCATTC GTTGTGGCAGGAGGAATCAATGGTATCATGCGTGTCATCAATGCCAGCAATGAGGAGATACACAAGAGTTTTGTTGGGCATGGGGACTCGATAAATGAAA TCCGGACTCAGCCACTGAAACCATCACTTGTGATATCTGCAAGCAAAGATGAATCAGTTCGGTTGTGGAATGTTCATACTGGAATTTGCATTTTGATATT TGCTGGAGCTGGTGGTCACCGCAATGAAGTTTTGAGTGTGGATTTCCATCCTTCAGACATATATCGCATTGCTAGTTGTGGCATGGACAACACCGTTAAG ATTTGGTCAATGAAAGAGTTTTGGACATATGTAGAGAAATCTTTTACATGGACAGATTGTCCTTCAAAGTTCCCCACAAAATATGTGCAGTTTCCAGTGT TCATAGCTTCAGTTCATTCAAACTACGTTGATTGTAATCGGTGGCTTGGTGATTTTATGCTGTCAAAGAGTGTTGATAATGAGATTGTGCTATGGGAACC CAAAATGAAGGAACAGTCTCCTGGAGAGGGTACTGCCGACATCCTTCAAAAATACCCCGTTCCAGAATGTGATATCTGGTTCATCAAATTTTCCTGTGAT TTCAATTACAATGCAGCTGCCATAGGGAATAGGGAAGGGAAGATCTATGTTTGGGAACTGCAAAGCAGCCCCCCTGTTCTCATAGCAAGGCTATCTCATG CTCAGTCCAAATCTCCAGTTAGACAGACTGCAATGTCCTTTGATGGAAGCACCATCCTTAGCTGCTGTGAGGATGGGTCAATATGGCGCTGGGATTCAAT ACCACCACCTTCCTAA
AA sequence Show only first row Show all	>Potri.001G417300.1 pacid=42791216 polypeptide=Potri.001G417300.1.p locus=Potri.001G417300 ID=Potri.001G417300.1.v4.1 annot-version=v4.1 MAKIALGCEPVVGSLTPSKKREYRLTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLDEGVIAVLQSYVDEDKDESFYTVSWACNIDGAPF VVAGGINGIMRVINASNEEIHKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK IWSMKEFWTYVEKSFTWTDCPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFMLSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD FNYNAAAIGNREGKIYVWELQSSPPVLIARLSHAQSKSPVRQTAMSFDGSTILSCCEDGSIWRWDSIPPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	0	1	FIE.1,PGE901
AT2G19490			recA DNA recombination family ...		Potri.006G148700 [exp]	1.41	0.8247
AT1G09794			Cox19 family protein (CHCH mot...		Potri.003G009800 [exp]	2.00	0.8145
					Potri.013G032000 [exp]	4.58	0.8182
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	8.94	0.8239
AT1G09290			unknown protein		Potri.010G099500 [exp]	9.79	0.7539
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.001G222500 [exp]	10.00	0.7819
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.002G165300 [exp]	10.39	0.8014
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	10.72	0.8123
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	14.42	0.7942
AT1G70150			zinc ion binding (.1)		Potri.010G037600 [exp]	16.58	0.7961

Compare expression of checked genes

Potri.001G417300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.