Plant FIBer expression Database

Potri.001G417350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51100 114 / 1e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G132900
[exp]
130 / 1e-39 AT1G51100 196 / 1e-63 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011316
[exp]
101 / 4e-28 AT1G51100 208 / 1e-67 unknown protein
Lus10040511
[exp]
97 / 3e-26 AT1G51100 213 / 1e-69 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G417350.1 pacid=42788613 polypeptide=Potri.001G417350.1.p locus=Potri.001G417350 ID=Potri.001G417350.1.v4.1 annot-version=v4.1
ATGGACTTTGTGGACAAGTTGGTGGGGTTAATGGATAAAGAGTTCGGTTCAACTGCGCTTTTGGCTAAGGCGGGTGAAATAGTGGCAGAGAGAACAAGAG
AAGAGGCTGAGGTTTTGAGAGATGAAGGGAAATTGGAGGATAGAATGGTGACTGAGTTGTTTAGACTTTTGAAGTTGATGGAGATGGATTTGGCTATGAT
CAAAGCTTCTTTTAAAGAAGAGGCTTGA
AA sequence
>Potri.001G417350.1 pacid=42788613 polypeptide=Potri.001G417350.1.p locus=Potri.001G417350 ID=Potri.001G417350.1.v4.1 annot-version=v4.1
MDFVDKLVGLMDKEFGSTALLAKAGEIVAERTREEAEVLRDEGKLEDRMVTELFRLLKLMEMDLAMIKASFKEEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51100 unknown protein Potri.001G417350
[exp]
0 1
AT3G04310 unknown protein Potri.019G023400
[exp]
2.00 0.9431
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
5.09 0.9530 Pt-PDE316.1
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Potri.006G205000
[exp]
8.94 0.9466
AT5G12040 Nitrilase/cyanide hydratase an... Potri.006G222900
[exp]
12.24 0.9214
AT2G20020 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) ... Potri.006G163100
[exp]
12.48 0.9443
AT5G62650 Tic22-like family protein (.1) Potri.017G148900
[exp]
15.49 0.9149
AT1G23180 ARM repeat superfamily protein... Potri.008G131900
[exp]
19.26 0.9415
AT2G44760 Domain of unknown function (DU... Potri.002G138600
[exp]
21.63 0.9424
AT5G38290 Peptidyl-tRNA hydrolase family... Potri.004G098100
[exp]
22.18 0.9364
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Potri.015G091700
[exp]
24.18 0.9362

Potri.001G417350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.