Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1241 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1240 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1225 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 1212 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 1190 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 983 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 959 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G10680 910 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 906 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G28010 898 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G133800 [exp] 2178 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1251 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1234 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1229 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1227 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1207 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1125 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1120 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.016G093600 [exp] 987 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035834 [exp] 1922 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1743 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039533 [exp] 1518 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1511 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1247 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 1246 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1231 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10036617 [exp] 1209 / 0 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 1042 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 995 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.001G417600.1 pacid=42789039 polypeptide=Potri.001G417600.1.p locus=Potri.001G417600 ID=Potri.001G417600.1.v4.1 annot-version=v4.1 ATGGGAGGCAAAGATAGCATGTTTCGGTATGCTGATAGCAAAGACAAGCTGTTGATGTTCTTTGGGGTTCTGGGCAGCATTGGAGATGGATTGCAATATC CTCTCACAATGTATGTTCTTAGCCATGTTATCAATGAATATGGAAGCTCCAGTGCATCTGTGTCTATTGATACCGTGAACAAGTACTCTCTCAAGCTGCT ATATGTTGCAATTGCTGTTGGACTTTCTGCTTTTGTTGAAGGACTGTGTTGGACAAGAACTGCTGAGAGACAAACCTCTATAATGAGAATGGAATATCTG AAATCTGTCCTTAGACAAGAAGTTGGTTTCTTTGACACCCAAGAAGCTGGTTCTTCCACCACGCATCAAGTTGTCTCAACCATTTCTAATGATGCCAATT CAATCCAAGTAGCAATATGCGACAAGATACCCAACTGCCTTGCATATATGTCAACCTTCGTCTTCTGCCTCGTGACTTCTTACATGCTGTCATGGAAGCT TGCACTGGCAGCTCTTCCTCTCACATTGATGTTCATTATCCCGGGACTTGTATTTGGGAAGTTCATGATGGATGTGATCATGAAGATGATTGAATCATAT GGAGTTGCTGGCGGGATAGCCGAACAAGCTGTTTCATCTATAAGAACTGTATATTCATATGTAGCAGAGAATCAAACACTTGATAAGTTCAGTCGTGCAC TTCAACAAACAATGGAATTAGGAATAAAGCAAGGTTTCGCAAAGGGACTGTTGATGGGGAGCATGGGAATGATTTATGTTGGATGGTCTTTTCAGGCTTG GTTAGGTACTTATTTGGTGACAGAAAAAGGAGAAAAAGGAGGCTCTATCTTCGTAGCTGGAATCAATATCATCATGGGAGGATTGAGTGTTTTAGGAGCA CTCCCAAATCTAACTTCCATCACAGAGGCAATGGCTGCTTCTACTCGTATTTTTCAAATGATTGATCGAACTCCTAGTATAGACTCGGAGGATAAGAAGG GGAAGGCTTTGTCATATATAAGAGGAGAAATTCAATTTCAGGACATATATTTTAATTATCCATCAAGACCTGATACACCAATCTTGCAAGGCTTGAATCT CACGATTCCAGCAGGTAAGACAGTTGGTCTTGTGGGAGGCAGTGGTTCTGGAAAATCCACAGTGATTTCATTGCTTCAAAGATTTTATGACCCCAACGAA GGACAAATTCTCTTGGATGGACACAAAGTAAATAGGCTTCAGCTCAAATGGTGGAGATCGCAAATGGGTCTGGTTAACCAGGAACCAGTCCTCTTTGCAA CATCTATAAAGGAGAATATACTGTTTGGGAAGGAAGGAGCATCGATGGACGATGTGGTAAATGCTGCTAAGGATGCAAATGCTCATGACTTCATTACCAA GTTACCAGATGGATATGAAACTCAAGTTGGTCAATTCGGATTCCAACTATCTGGTGGCCAAAAGCAGAGAATTGCCATAGCAAGGGCTCTGATCAGGGAC CCCAAAATCCTGCTTCTTGATGAAGCAACCAGTGCACTGGATGTACAGTCAGAAAGAATAGTTCAGGACGCAATAGATGAGGCATCGAAAGGAAGGACGA CAATCACCATTGCGCATCGCCTCTCCACAATCAGAACAGCAAACCTTATTGTGGTTCTACAAGCAGGGAGAGTAATCGAATCAGGTTCACATGAACAGCT AATGCAAAAAAATGATGGACAGGGCGGGGAATACTTCCGGATGGTGCAATTGCAGATGGCATCACAAAATGAAGCTTCTAATGACTTCACTTATCACAAT GATGGGCATAGCTTCCACAGGATGAGTCCTGCGCCAAGCCCACTGAGTGTGAGAAGAAGCGTTCCAGGCACTCCACTGTTAAACCCCTTTAGCCCGGCAT TCTCTATGGGCACCCCTTATTCCTTCTCAATCTACGATCCCGCAGATGAAAGTTTCGAAGATGATTTATACCAACTGAATTATCCAGCTCCTTCTCAGTG GCGTCTGCTGAGAATGAATGCACCGGAATGGGGAAGTGCCTTGATTGGATGCTTGGCGGCAATAGGTTCTGGAGCAGTTCAACCTATTAATGCTTACTGT GTGGGATCGCTCATATCGAACTACTTTCTCAGTGACAAATCCGCCGCCAAGCATAAATCCAACAAATTGTCTCTTGTTTTCTTAGGCATTGCTGCTCTAG ATTTCATCACCAGTCTCCTCCAACACTACAATTTTGCAGTCATGGGAGAAAAGTTGACAAGGAGAGTACGTGAGAAACTGCTAGCAAAGCTGATGACTTT TGAAATAGGGTGGTTTGATGATGACGAGAACACAAGTGCATCAATTTGTGCAAAGTTAGCCACCGAAGCCAACATGTTTCGATCTCTTGTTGGGGACCGA ATGTCATTGCTGGTTCAAGCATTCTTCGGGTCTCTCTTTGCTTATACACTAGGGCTTATTCTCACGTGGAGGCTCGCCCTTGTGATGATTGCAGTACAGC CATTAGTTGTTGGGAGCTATTATTCAAAGAGTGTTTTGATGAAAAGCATGGCAGGGAAGGCACAAAAAGCTCAAAAGGAAGGAAGTCAGTTGGCAAGTGA AGCTGTTATTAACCATAGAACCATAACCGCATTCTCTTCTCAGAGAAGAATGTTGGGGCTTTTCAGAGCTACCTTGAGAGGTCCCAGAGAGGAGAGTGCT AGACACTCTTGGTTGTCAGGTTTTGGCCTGTTTAGCTCACAATTTCTTAATACAGCTTCTACTGCACTAGCTTTCTGGTACGGAGGAAGGCTTTTGACGG AAGGTTTGATATCCCCAGAGCACCTTTTCCAGGCATTTTTGATACTGCTTTTCTCTGCTTATGTCATTGCAGAAGCTGGAAGTATGACCAATGATTTATC GAAAGGAGGGAATGCCATTCGATCGGTGTTAGCAATCCTAGATAGGAAAAGCGAGATTGACCCAAATAACTCTTGGGGTGCTTTGGACATCAAAAAGAAG TTGAAGGGCCAAGTAGAGTTCAACAATGTCTTCTTTGCATATCCAACAAGACCAGACCAAATGATCTTCAAGGGCTTGAACCTTAAAATTGATGCAGGGA AGACAATGGCACTGGTGGGACCAAGTGGTTCTGGAAAATCTACCGTCATTGGACTTATAGAGAGGTTTTATGATCCCATGAAAGGAACAGTTTTTATTGA TGGACAGGACGTAAAGAGCTACAATCTGAGGTTGCTGAGATCTCATATTGCGTTAGTCAGCCAGGAACCAACACTGTTTGCTGGTACTATCCGTGAAAAT ATTGCCTATGGTAAAGAGGATGCAAGAGAATCTGAGATACGAAAGGCTGCAGTTCTTGCCAATGCACATGAATTCATCAGTGGAATGAAAGAAGGATATG ATACCTACTGTGGAGAAAGAGGGGTTCAGTTGTCTGGAGGTCAAAAGCAAAGGATAGCACTTGCTCGTGCGATAATCAAGGACCCATCAATCCTCTTGCT GGATGAGGCAACTAGTGCGCTTGACAGTGTGTCAGAGAGCTTAGTTCAAGAGGCACTTGAGAAGATGATGGTTGGCAGAACATGTGTAGTCATTGCTCAT CGGCTGTCAACAATACAGAAATCCAACTGCATTTCAGTTATCAAGAATGGAAAAGTTGTGGAACAAGGTTCACACAGTCAACTAATGGAATTGGGTAGTG GAGGAGCGTACTACTCTCTGACAAGAATACAAAGTGGAAGCTCCTCTTATCATTGA
AA sequence Show only first row Show all	>Potri.001G417600.1 pacid=42789039 polypeptide=Potri.001G417600.1.p locus=Potri.001G417600 ID=Potri.001G417600.1.v4.1 annot-version=v4.1 MGGKDSMFRYADSKDKLLMFFGVLGSIGDGLQYPLTMYVLSHVINEYGSSSASVSIDTVNKYSLKLLYVAIAVGLSAFVEGLCWTRTAERQTSIMRMEYL KSVLRQEVGFFDTQEAGSSTTHQVVSTISNDANSIQVAICDKIPNCLAYMSTFVFCLVTSYMLSWKLALAALPLTLMFIIPGLVFGKFMMDVIMKMIESY GVAGGIAEQAVSSIRTVYSYVAENQTLDKFSRALQQTMELGIKQGFAKGLLMGSMGMIYVGWSFQAWLGTYLVTEKGEKGGSIFVAGINIIMGGLSVLGA LPNLTSITEAMAASTRIFQMIDRTPSIDSEDKKGKALSYIRGEIQFQDIYFNYPSRPDTPILQGLNLTIPAGKTVGLVGGSGSGKSTVISLLQRFYDPNE GQILLDGHKVNRLQLKWWRSQMGLVNQEPVLFATSIKENILFGKEGASMDDVVNAAKDANAHDFITKLPDGYETQVGQFGFQLSGGQKQRIAIARALIRD PKILLLDEATSALDVQSERIVQDAIDEASKGRTTITIAHRLSTIRTANLIVVLQAGRVIESGSHEQLMQKNDGQGGEYFRMVQLQMASQNEASNDFTYHN DGHSFHRMSPAPSPLSVRRSVPGTPLLNPFSPAFSMGTPYSFSIYDPADESFEDDLYQLNYPAPSQWRLLRMNAPEWGSALIGCLAAIGSGAVQPINAYC VGSLISNYFLSDKSAAKHKSNKLSLVFLGIAALDFITSLLQHYNFAVMGEKLTRRVREKLLAKLMTFEIGWFDDDENTSASICAKLATEANMFRSLVGDR MSLLVQAFFGSLFAYTLGLILTWRLALVMIAVQPLVVGSYYSKSVLMKSMAGKAQKAQKEGSQLASEAVINHRTITAFSSQRRMLGLFRATLRGPREESA RHSWLSGFGLFSSQFLNTASTALAFWYGGRLLTEGLISPEHLFQAFLILLFSAYVIAEAGSMTNDLSKGGNAIRSVLAILDRKSEIDPNNSWGALDIKKK LKGQVEFNNVFFAYPTRPDQMIFKGLNLKIDAGKTMALVGPSGSGKSTVIGLIERFYDPMKGTVFIDGQDVKSYNLRLLRSHIALVSQEPTLFAGTIREN IAYGKEDARESEIRKAAVLANAHEFISGMKEGYDTYCGERGVQLSGGQKQRIALARAIIKDPSILLLDEATSALDSVSESLVQEALEKMMVGRTCVVIAH RLSTIQKSNCISVIKNGKVVEQGSHSQLMELGSGGAYYSLTRIQSGSSSYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.001G417600 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091600 [exp]	10.53	0.9734	Pt-CHI3.6
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	14.07	0.9706
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118700 [exp]	20.04	0.9704
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	22.27	0.9702	CHI3.4
					Potri.014G081800 [exp]	26.36	0.9701
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Potri.004G167100 [exp]	27.38	0.9701
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	27.85	0.9700
					Potri.005G130750 [exp]	30.62	0.9700
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	39.38	0.9687	PtrAMT4-2
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	40.24	0.9692

Compare expression of checked genes

Potri.001G417600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.