Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 369 / 7e-128 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 331 / 4e-113 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT4G25420 166 / 3e-48 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G58660 156 / 8e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 155 / 2e-44 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G77330 154 / 3e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G12010 153 / 6e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 151 / 8e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 150 / 1e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 149 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134000 [exp] 498 / 7e-179 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 488 / 7e-175 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 402 / 8e-141 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 390 / 2e-136 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 338 / 8e-116 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 322 / 3e-109 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 203 / 6e-63 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 164 / 7e-48 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G224100 [exp] 157 / 2e-45 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018372 [exp] 362 / 3e-125 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 359 / 6e-124 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 350 / 3e-120 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 339 / 3e-116 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 339 / 5e-116 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 338 / 1e-115 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 333 / 3e-113 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10021002 [exp] 155 / 2e-44 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10040112 [exp] 152 / 4e-43 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10021943 [exp] 152 / 9e-43 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G418200.1 pacid=42791532 polypeptide=Potri.001G418200.1.p locus=Potri.001G418200 ID=Potri.001G418200.1.v4.1 annot-version=v4.1 ATGGATCCTCCATTTCAAGAGAAATACAGATCCCTCTTCAACGATTATACCATAGTATCAAAAGACAAGGATGATAGTCTAATGAATGCTAATGATGAGT GTGAGCTGCCTCTCATAGATCTTCATCGTTTGACACTTGAATACTCGGAGAGAGAGCAATGTGTAAAGGAGATAAAGCAGGCTGCAAGTGAATGGGGATT CCTTCAAGTTGTCAATCATGGGATTCCACAAGAGATGTTGAAGAGCCTTCAATACGAGCAAAGGAAGGCTTTCGAACATCCGTTCAGAAAAAAGGCTGAA GACAACATTCTGAATTTGTCTGCAAATAGTTACAGATGGGGAAACCCTAGAGCCACTTGTTTGAGGCAGCTCGCATGGTCAGAAGCCTTCCACGTACCTC TCACTGATATTTCAAGAATCGGTGATGCATACAAGAGTCTCAGTGCAAGCATTGAAGCTTTCACAACAACAGCTAACGCATTAGCTAAAGGCGTGGCAGA AATTCTGGCTGAGAATCTTGGAGTTTCATCCACTTTCTTTGAAGAGAATTGTCCAGAAGAAACTAGTTATCTTCGAATGAACAGATATCCTCCATGTCCA TTCTCTTCTGAGGTCTTTGGCTTGATACCTCATACCGATAGTAGTTTCCTCACTGTATTAAATCAAGATCAGATTGGAGGATTGCAACTATTGAAAAATG GAAGATGGATTAACGTTAAACCTAATCCAGAAGCTCTAGTGATTAATATTGGTGACTTATTCCAGGCATTGAGCAATGATGTTTACAAAAGCATCAAGCA TCGGGTGCTTGCCCCCCAACAAGTTGAAAGGTTTTCTTTGGCATTTTTCTATTGCCCCACTTATGAGACTGTGATAGAGAGTAGCATCAAGCCATCAAAG TATAAGGAGTTCACATTCAGAGAGTTTATGATGCAGATTCAAAGGGATCTTAAAGCTACTGGTGATAAAGTTGGAGTCTCAAGGTTTCTTCTGTGA
AA sequence Show only first row Show all	>Potri.001G418200.1 pacid=42791532 polypeptide=Potri.001G418200.1.p locus=Potri.001G418200 ID=Potri.001G418200.1.v4.1 annot-version=v4.1 MDPPFQEKYRSLFNDYTIVSKDKDDSLMNANDECELPLIDLHRLTLEYSEREQCVKEIKQAASEWGFLQVVNHGIPQEMLKSLQYEQRKAFEHPFRKKAE DNILNLSANSYRWGNPRATCLRQLAWSEAFHVPLTDISRIGDAYKSLSASIEAFTTTANALAKGVAEILAENLGVSSTFFEENCPEETSYLRMNRYPPCP FSSEVFGLIPHTDSSFLTVLNQDQIGGLQLLKNGRWINVKPNPEALVINIGDLFQALSNDVYKSIKHRVLAPQQVERFSLAFFYCPTYETVIESSIKPSK YKEFTFREFMMQIQRDLKATGDKVGVSRFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.001G418200 [exp]	0	1
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.007G108000 [exp]	28.87	0.6704
AT1G14550			Peroxidase superfamily protein...		Potri.010G236870 [exp]	33.98	0.6982
AT1G29500			SAUR-like auxin-responsive pro...		Potri.017G043600 [exp]	237.41	0.6726	SAUR56

Compare expression of checked genes

Potri.001G418200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.