Plant FIBer expression Database

Potri.001G418800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20480 433 / 4e-151 AtLpxK lipid X K, tetraacyldisaccharide 4'-kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase
Representative CDS sequence
>Potri.001G418800.1 pacid=42788137 polypeptide=Potri.001G418800.1.p locus=Potri.001G418800 ID=Potri.001G418800.1.v4.1 annot-version=v4.1
ATGGAGAAACTGAGGAGAGTAGTGAAGGAGATAGCCTACGTGCAAGACTACACTAAGCTCTCTACACTGCACCAATCTTTAATTCCTATCCTCTCATTAG
CTTCCTCACTTTACAGAGTTGTTCTCTCTATCCGCCACTATCTCTACCACTTTGGCTTCTTCTCTAAGCACAGGTTGCCAGTGCCGGTGATAAGTGTCGG
CAACTTAACATGGGGAGGAAATGGGAAGACTCCAATGGTTGAGTTCATTTCTTCATGGTTAGCTGATTCTGGAATTTCACCTCTCATTCTTACTAGGGGT
TATGCTGGTGGAGATGAAGCTAGGATGCTTACTAGGCATCTTCGTGGGAGAGCTGTAAAGATTGGTGTTGGTGCAAATCGAGCTGCTACTGCTGCTTGCT
TCTTTAAGCGACATGGTTATGTAGATCCTCGTGATTATTTAGTTGAGGGCAAATGGCATGAACAGAAAGAGGGAAGTCGGATTAACTCAAGAAAAGTTGG
TGTTGTGGTTTTGGATGATGGAATGCAGCACTGGAGCCTGCAGCGTGACATAGAGATTGTCATGGTTAATGGACTAACACCATGGGGAAATCATCAAATA
CTTCCTCTTGGACCTTTAAGGGAACCTTTGAAAGCCCTCGGAAGAGCAGATGTTGCTGTAATTCATCATGCAAACCTGGTTTCGGAGCATAATCTCAGAG
ACATCAAGTTAATGATGCAAGAAGTTAAAAAATCTCTTCCTATTTGTTTCACTAGAATGTCTCCCACACACTTCTTTGAAGTAGGAAATATCAACACCAG
AACACCATTGGATATCTTATGCAACGGTGTTGTGCTATGTGTTTCTGCAATTGGTTCTGCAAATGCTTTTGTGCAGGGGATAAAGAAGATGGGAACATTG
TATGTTGATCGACTTGATTTCAGTGATCATCACTCACTCCAAGACACGGATATTGAGATAATCAGAATGAAACTCAAAGAGCTGGAGGATAAGTTTGGCT
CCATGCCAGTTGTTGTCATAACAGAGAAGGATTATGATAGAGACCCTGAAATTCTCAGGCATTTGAGTCCTTATAAAGTTATGGCACTCTGCTCAGAATT
GCAAATCATTCCTTGTAGAGGCAACGGGGATGATGATTTCAAAAAGCTGTTGAAGGAGCTGGTGGAGGTAAAATTTTTAGGAGCAAACCAGAACTAG
AA sequence
>Potri.001G418800.1 pacid=42788137 polypeptide=Potri.001G418800.1.p locus=Potri.001G418800 ID=Potri.001G418800.1.v4.1 annot-version=v4.1
MEKLRRVVKEIAYVQDYTKLSTLHQSLIPILSLASSLYRVVLSIRHYLYHFGFFSKHRLPVPVISVGNLTWGGNGKTPMVEFISSWLADSGISPLILTRG
YAGGDEARMLTRHLRGRAVKIGVGANRAATAACFFKRHGYVDPRDYLVEGKWHEQKEGSRINSRKVGVVVLDDGMQHWSLQRDIEIVMVNGLTPWGNHQI
LPLGPLREPLKALGRADVAVIHHANLVSEHNLRDIKLMMQEVKKSLPICFTRMSPTHFFEVGNINTRTPLDILCNGVVLCVSAIGSANAFVQGIKKMGTL
YVDRLDFSDHHSLQDTDIEIIRMKLKELEDKFGSMPVVVITEKDYDRDPEILRHLSPYKVMALCSELQIIPCRGNGDDDFKKLLKELVEVKFLGANQN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
0 1
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.001G031700
[exp]
1.00 0.8464
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Potri.015G014900
[exp]
3.16 0.8297
AT5G67640 unknown protein Potri.007G006000
[exp]
4.24 0.8224
AT3G45880 2-oxoglutarate (2OG) and Fe(II... Potri.001G233200
[exp]
4.89 0.8051
AT3G54440 glycoside hydrolase family 2 p... Potri.001G027400
[exp]
5.47 0.8381
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.001G074400
[exp]
6.48 0.8408 ENOD8.2
AT5G47940 unknown protein Potri.009G060000
[exp]
6.63 0.8086
AT3G24150 unknown protein Potri.018G128700
[exp]
7.21 0.8031
AT2G39490 F-box family protein (.1) Potri.008G050800
[exp]
12.36 0.8090
AT3G53690 RING/U-box superfamily protein... Potri.018G064400
[exp]
12.72 0.7912

Potri.001G418800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.