Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27120 243 / 2e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011161 [exp] 225 / 2e-72 AT4G27120 279 / 8e-94 unknown protein Lus10043066 [exp] 196 / 1e-60 AT4G27120 252 / 8e-83 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF09756 [poplar] [flax] DDRGK DDRGK domain
Representative CDS sequence Show only first row Show all	>Potri.001G418900.1 pacid=42789527 polypeptide=Potri.001G418900.1.p locus=Potri.001G418900 ID=Potri.001G418900.1.v4.1 annot-version=v4.1 ATGGAAGAATTATTTGTTTTGATTCTCTCAATGCTTCTTGTCGTCGGTTTAATACCGTTATATCTATGGAAACGCCGTCAAGATCGATCGCAAGACGAAC CGCAACAACAAGAAGAACCGCAGGTTCCGAGAGGAGAGACAGTGGTGCGTGCAACTGGTACGCGTAGAATGCGTAGAAGACCAGCAGCTGGAGCGAGTTC ATCAAGAAATGTTGAAGCAACTGTTGAAGATGCTGGTGCTGAAAGTGATGATGAAGTTGTTGGTGGTGCTTATCATGAGGATAAGGCATCGAAGAAGGAG AAGAAACGGCAGGAGAGGGAAGCACAAAGACAGGCTGAGGAAGCGTCACGTGATTCAAGGCTGACCAAACAAGACCGTTATGCAGAAATAAGGAGGAGGA AGGAAGAAGAACGTGAGGCAAAAGAGCGCATGCTAGAAGAAGAAGCCAAGGCTCGACAGGCCAAGGAGGAGGAAACTGCTGCGTTGGAGTTTGATAAATG GAAAGGAGAGTTTTCAGTGGATGCTGAAGGATCAACAGGAAATGATTTGCAAGATGGAAATCAGGATTTGTTGTCTGATTTTGTGGAATACATAAAGAAA CATAAATGTCTTCCTTTGGAAGATCTTGCTGCAGAATTTAAGCTCCGGACTCAGGAATGTATCAATCGGATCACCTCCTTGGAAAGTATGGGGCGACTTT CTGGTGTCATGGATGATAGAGGAAAATACATATACATCTCACAAGAAGAGATGAGAGCTGTTGCTGACTATATTAAGCGTCAAGGGAGGGTTAGCATCTC GCATCTGGCAAGCAAGTCCAACCAATTCATTGATTTGGAGCCAAAAGCACAGTTTGTTGAGGAAATCAGCAATGCGGAAGAACTCACTGTTGCTTGA
AA sequence Show only first row Show all	>Potri.001G418900.1 pacid=42789527 polypeptide=Potri.001G418900.1.p locus=Potri.001G418900 ID=Potri.001G418900.1.v4.1 annot-version=v4.1 MEELFVLILSMLLVVGLIPLYLWKRRQDRSQDEPQQQEEPQVPRGETVVRATGTRRMRRRPAAGASSSRNVEATVEDAGAESDDEVVGGAYHEDKASKKE KKRQEREAQRQAEEASRDSRLTKQDRYAEIRRRKEEEREAKERMLEEEAKARQAKEEETAALEFDKWKGEFSVDAEGSTGNDLQDGNQDLLSDFVEYIKK HKCLPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKYIYISQEEMRAVADYIKRQGRVSISHLASKSNQFIDLEPKAQFVEEISNAEELTVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27120			unknown protein		Potri.001G418900 [exp]	0	1
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.001G170400 [exp]	3.60	0.8381
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	4.69	0.8310
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	6.92	0.8888
AT1G21370			unknown protein		Potri.002G071300 [exp]	7.54	0.8558
AT1G65720			unknown protein		Potri.017G142100 [exp]	10.19	0.8283
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	12.00	0.8619
AT2G27310			F-box family protein (.1)		Potri.004G199300 [exp]	17.88	0.8335
AT1G20970			unknown protein		Potri.006G191500 [exp]	18.49	0.8330
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	24.67	0.8310
					Potri.016G091300 [exp]	25.21	0.8416

Compare expression of checked genes

Potri.001G418900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.