Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COBL10.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20580 802 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 773 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT4G16120 693 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G16860 664 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT5G49270 654 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 149 / 7e-39 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 142 / 2e-36 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 140 / 9e-36 COBL1 COBRA-like protein 1 precursor (.1) AT5G15630 135 / 3e-34 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 125 / 2e-30 COBL6 COBRA-like protein 6 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135200 [exp] 1176 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.010G001100 [exp] 704 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 641 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.004G219200 [exp] 142 / 2e-36 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.015G060000 [exp] 140 / 2e-35 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 136 / 1e-34 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 136 / 1e-34 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 132 / 6e-33 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 130 / 3e-32 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011160 [exp] 863 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 856 / 0 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10016847 [exp] 704 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 696 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10025045 [exp] 612 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10010022 [exp] 550 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10012598 [exp] 149 / 8e-39 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10021144 [exp] 144 / 6e-37 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 144 / 7e-37 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10007986 [exp] 144 / 8e-37 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G419000.1 pacid=42788265 polypeptide=Potri.001G419000.1.p locus=Potri.001G419000 ID=Potri.001G419000.1.v4.1 annot-version=v4.1 ATGAAAGCAAATTTAGGAGTGGAGGTTCCATGGCAACTGGTAATGCTAATTCTCATTGCCTTACCATCTGTGCTTTTTCATGTTTGCCATGGCCAAACCG ATGATTATGAAAATCCTGCAGCCCCACCACCTGGCCTGGATGAATGCAATGGATTATTTCTCACCTATTCTTTCATATCCCGCGAAAAAGAATATCCAAG GGTAAAGAATGCATCCGCACAGGCATGGGCGTTCAAGTCATTGGCAACGATAACCAATACAGGCCAATATGAACTAAAGGGTTGGCAGATGTTTGTAGGC TTTCAGCACAAAGAAATTTTAGTGTCTGCTTCCGGGGCAATCGTCGTCGATGGTGATGATTTCCCTCTGGAAGTTGGCAATGGGACAACCTTCGCAGGAA ATCCGATGACTGACCTGAAGACTGCAATTGACACAGCAGGAGATTTCACCCAGATTTCAGCACAGATTGAGATTACAGGCTCGGTGTTTGGAATTAAGCC ACCAGGAGTGCCTATGCCAAAGAATATAAAGCTTGTTAATGCTGGGTACAAATGCCCTAAAGCAACTTTGAAAGGAAAAACCTATATGCAAGTTTGTTGT AAGAAGGATCCCAAAGCCAAGAAGGTTGACAAGAAAGTGCTCAAATTCTTGCCTCGTCGATACGGGGATCTCTCTCTCACTTACGATGTACTTCAAGCCT ACGGTAGCAACTACCAGGCCCAAGTTACTATTGATAATATCAATCCATTAGGCCGGCTTGATCACTGGAACCTAACCTGGGAATGGATGAATGGAGAGTT CATTTCCAAGATGAGAGGAGCCTACACTCACAAAAGAGACTTTTCCGAATGCGTTTACGGTCCTGCTGGAAAATATTACAAAGATCTCGACTTCTCCACT GTTATGAACTGTGAAAAAAAGCCAGTCATCGCAGATCTTCCTCCGGAAAGGAAAAATGATTCACAAGTTGGGAAGTTGCCATACTGTTGTAGAAATGGTA CCCTTTTGCCAGCTATAATGGATGAGAGCAAGGCAAGGTCCATATTCCAATTGGAAGTCTTCAAAATGCCTCCTTTCTTGAACAGAACTGCTCTTGTACC ACCCGAGAAATGGAAGATTGATGGAGTTGTCAATCCTCAATACAAGTGTGGCCCTCCAATCAGAGTAGATCCAACTGAATTTCCTGATTCAAGTGGACTT GATTCTAAAACTTATGCTATTGCAAGTTGGCAAGTGACTTGCAACATAACGCGTCCGAAGGAGAAGCTTTCACGATGCTGTGTTTCTTTCTCTGCTTATT ACAATAGATCTGCCATTCCCTGCAATACTTGTGCCTGTGGTTGTGACAATAATATAGGTTGCAGCAAGACTGCAAGAGCAATGCTTCTCCCAGCAGAGAG TCTTCTTGTGCCTTTTGATAACAGGACAAACAAGGCATTAGCATGGGCTGATCTCAATAAATTCAAAGTTCCAAACCCAAGACCTTGTCCTGATAATTGT CCAGTTAGCCTCAATTGGCATATTGACTCTGATTACAAGACTGGATGGACTGCTAGTGTCACTCTTTTCAACTGGGGTGATTCTCCTTTCGAGGATTGGT TTTCTGCAATCCAAATAAACAAAGCCTATAAGGGCCTTGAAGGTGTGTATTCCTTCAACGGAACCACGTTTGACAACCTCAACAAAACTATCTTCCTTCA AGGCCTACCAGGTTTGAATTTCTTGGTGGGAGAGGTAAATGGAACTAAACCAGGAGATCCAAGGATTCCTGGAAAGCAACAAACTAAGATATCATTTACC AAAAAACATACCCCGGGCATAAATATAGCACGGGGTGATGGGTTTCCTACAAGAATACTCTTCAATGGAGAAGAGTGTGCTCTGCCTAAGCAAATCCCCC TGTCGAGTGCAGAGCAAAAATCTCCTTTTAAGTTCCTCACAGTCATAATCATGGCAATCATGACTTTCATTACGATGACAGATCACCTTCATTGA
AA sequence Show only first row Show all	>Potri.001G419000.1 pacid=42788265 polypeptide=Potri.001G419000.1.p locus=Potri.001G419000 ID=Potri.001G419000.1.v4.1 annot-version=v4.1 MKANLGVEVPWQLVMLILIALPSVLFHVCHGQTDDYENPAAPPPGLDECNGLFLTYSFISREKEYPRVKNASAQAWAFKSLATITNTGQYELKGWQMFVG FQHKEILVSASGAIVVDGDDFPLEVGNGTTFAGNPMTDLKTAIDTAGDFTQISAQIEITGSVFGIKPPGVPMPKNIKLVNAGYKCPKATLKGKTYMQVCC KKDPKAKKVDKKVLKFLPRRYGDLSLTYDVLQAYGSNYQAQVTIDNINPLGRLDHWNLTWEWMNGEFISKMRGAYTHKRDFSECVYGPAGKYYKDLDFST VMNCEKKPVIADLPPERKNDSQVGKLPYCCRNGTLLPAIMDESKARSIFQLEVFKMPPFLNRTALVPPEKWKIDGVVNPQYKCGPPIRVDPTEFPDSSGL DSKTYAIASWQVTCNITRPKEKLSRCCVSFSAYYNRSAIPCNTCACGCDNNIGCSKTARAMLLPAESLLVPFDNRTNKALAWADLNKFKVPNPRPCPDNC PVSLNWHIDSDYKTGWTASVTLFNWGDSPFEDWFSAIQINKAYKGLEGVYSFNGTTFDNLNKTIFLQGLPGLNFLVGEVNGTKPGDPRIPGKQQTKISFT KKHTPGINIARGDGFPTRILFNGEECALPKQIPLSSAEQKSPFKFLTVIIMAIMTFITMTDHLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Potri.001G419000 [exp]	0	1	COBL10.2
					Potri.006G276750 [exp]	7.07	0.8448
AT2G14830			Regulator of Vps4 activity in ...		Potri.009G090100 [exp]	9.64	0.7501
AT4G33380			unknown protein		Potri.002G127700 [exp]	14.28	0.7799
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.019G023900 [exp]	20.19	0.7659
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	22.29	0.7796
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	25.09	0.7990
AT1G72480			Lung seven transmembrane recep...		Potri.001G166500 [exp]	30.19	0.7759
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Potri.006G091300 [exp]	34.17	0.7786
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	34.64	0.7676
					Potri.009G144550 [exp]	34.91	0.7311

Compare expression of checked genes

Potri.001G419000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.