Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20560 761 / 0 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT4G27080 758 / 0 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT1G50950 706 / 0 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT1G36050 91 / 1e-19 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 80 / 6e-16 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G54960 78 / 4e-15 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT3G22290 77 / 4e-15 Endoplasmic reticulum vesicle transporter protein (.1) AT1G21750 72 / 3e-13 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 69 / 3e-12 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 68 / 6e-12 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135500 [exp] 924 / 0 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.006G023900 [exp] 89 / 5e-19 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.016G022800 [exp] 89 / 5e-19 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.005G168800 [exp] 89 / 7e-19 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 88 / 1e-18 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.008G040100 [exp] 86 / 6e-18 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.001G206100 [exp] 79 / 9e-16 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 79 / 9e-16 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G082100 [exp] 77 / 9e-15 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011157 [exp] 774 / 0 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 757 / 0 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 748 / 0 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10019611 [exp] 699 / 0 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10027795 [exp] 81 / 1e-16 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 82 / 2e-16 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036449 [exp] 79 / 1e-15 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036158 [exp] 76 / 2e-14 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10018156 [exp] 75 / 4e-14 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 74 / 1e-13 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] PF07970 [poplar] [flax] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter CL0172 [poplar] [flax] PF13850 [poplar] [flax] ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Representative CDS sequence Show only first row Show all	>Potri.001G419300.1 pacid=42789915 polypeptide=Potri.001G419300.1.p locus=Potri.001G419300 ID=Potri.001G419300.1.v4.1 annot-version=v4.1 ATGGTTTCAACGAACAAGCTCAAATCCGTCGATTTTTACAGGAAAATTCCTAGAGATTTGACAGAGGCATCGTTATCAGGTGCAGGATTATCGATAGTAG CTGCCCTAGCTATGGTGTTTTTGTTTGGAATGGAACTTAATAATTATTTAACTGTCAACACCTCTACATCTGTGATTGTTGACAATAGTTCTGATGGAGA GTTCTTACGTATTGATTTCAATCTTAGCTTTCCTTCACTCTCATGTGAATTTGCATCGGTTGACGTGAGTGATGTGTTAGGAACTAACAGGTTGAATATA ACAAAAACAATCCGCAAATTCTCAATTGATCATGATTTGAAGCCCACTGGATCTGAGTTTCACTCTGGACCAGTTTTGCATCACATCAATCATGGAGATG AAGTTCATGAAGAAGGCAGTGAAGGTTCTGTATCACTCAAAGCTCATAATTTTGATCAATACACGCATCAGTATCCAATTTTAGTTGTCAATTTTTATGC TCCTTGGTGCTACTGGAGTAATCGCCTGAAACCTTCATGGGAAAAGGCAGCTAAAATAATAAGAGAAAGGTATGATCCAGAAATAGATGGGCGGATTCTG TTGGCTAAGGTTGACTGCACTGAAGAAGGTGATCTGTGTAGGAGGAATCACATACAAGGGTATCCATCAATTCGTATTTTCCGTAAAGGAAGTGATCTTC GGGATGACCATGGACACCATGACCATGAATCTTATTATGGAGATCGAGATACAGACAGCCTGGTTAAGACAATGGAAGGTTTGGTTGCACCTATTGCAAT GGAATCTCAAAGGCATGCTTTGGAGCATAAACCTGAAAATGCAACAGAGCATGTTAAAAGACCAGCTCCTTCAGCCGGAGGATGTAGAATTGAAGGATAT GTGCGTGTAAAGAAGGTTCCAGGCAACCTCGTGATCTCAGCTCGCTCAGGAGCCCATTCCTTTGATTCTGCTCAAATGAACTTGTCACATGTCATATCCC ATTTCTCGTTTGGTATGAAGGTTTTGCCCAGGGTAATGAGTGACGTGAAGCGTTTGATACCTCACATTGGTCGAAGTCATGACAAGTTGAATGGCCGATC ATTTATTAATCATCGTGATGTAGGGGCTAATGTCACTATAGAGCATTATCTCCAAGTTGTTAAAACTGAGGTGGTTACAAGAAGATCTTCAGCTGAGCAC AAATTAATTGAGGAGTATGAATATACAGCTCATAGCAGTTTGGCACAGACTGTCTACATGCCAACTGCAAAATTCCATTTTGAGCTCTCTCCCATGCAGG TTTTGATCACTGAAAATCCCAAGTCTTTTTCGCATTTTATCACTAATGTCTGTGCCATAATCGGAGGTGTCTTCACGGTGGCTGGTATATTGGATTCAAT TTTGCACAACACATTTAGAATGATGAAAAAAGTAGAACTCGGCAAAAATTTTTGA
AA sequence Show only first row Show all	>Potri.001G419300.1 pacid=42789915 polypeptide=Potri.001G419300.1.p locus=Potri.001G419300 ID=Potri.001G419300.1.v4.1 annot-version=v4.1 MVSTNKLKSVDFYRKIPRDLTEASLSGAGLSIVAALAMVFLFGMELNNYLTVNTSTSVIVDNSSDGEFLRIDFNLSFPSLSCEFASVDVSDVLGTNRLNI TKTIRKFSIDHDLKPTGSEFHSGPVLHHINHGDEVHEEGSEGSVSLKAHNFDQYTHQYPILVVNFYAPWCYWSNRLKPSWEKAAKIIRERYDPEIDGRIL LAKVDCTEEGDLCRRNHIQGYPSIRIFRKGSDLRDDHGHHDHESYYGDRDTDSLVKTMEGLVAPIAMESQRHALEHKPENATEHVKRPAPSAGGCRIEGY VRVKKVPGNLVISARSGAHSFDSAQMNLSHVISHFSFGMKVLPRVMSDVKRLIPHIGRSHDKLNGRSFINHRDVGANVTIEHYLQVVKTEVVTRRSSAEH KLIEEYEYTAHSSLAQTVYMPTAKFHFELSPMQVLITENPKSFSHFITNVCAIIGGVFTVAGILDSILHNTFRMMKKVELGKNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20560		ATPDI12, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.001G419300 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	1.41	0.9120
AT3G45230			hydroxyproline-rich glycoprote...		Potri.009G013500 [exp]	3.00	0.9063
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	5.29	0.9051
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.014G066800 [exp]	7.61	0.9066	GOS12.1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.014G124200 [exp]	15.19	0.8880
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	15.42	0.8772
AT2G39960			Microsomal signal peptidase 25...		Potri.010G192700 [exp]	17.20	0.8889
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.016G024800 [exp]	17.26	0.8226
AT3G49720			unknown protein		Potri.001G288200 [exp]	17.34	0.8922
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	20.34	0.8935	Pt-FAH1.1

Compare expression of checked genes

Potri.001G419300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.