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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G04890	415 / 1e-135	HD	PDF2	protodermal factor 2 (.1)
AT4G21750	408 / 6e-133	HD	ATML1	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT1G05230	404 / 6e-132	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3.4)
AT2G32370	327 / 3e-102	HD	HDG3	homeodomain GLABROUS 3 (.1)
AT3G61150	327 / 2e-101	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
AT4G00730	304 / 1e-92	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT1G17920	275 / 5e-83	HD	HDG12	homeodomain GLABROUS 12 (.1)
AT1G73360	270 / 9e-81	HD	ATHDG11, HDG11, EDT1	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
AT5G52170	268 / 3e-80	HD	HDG7	homeodomain GLABROUS 7 (.1)
AT1G79840	268 / 6e-80	HD	GL2	GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.004G020400 [exp]	412 / 7e-135	AT4G04890	1185 / 0.0	protodermal factor 2 (.1)
Potri.011G025000 [exp]	404 / 9e-132	AT4G21750	1164 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.002G230200 [exp]	393 / 6e-127	AT1G05230	1159 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Potri.014G152000 [exp]	389 / 1e-125	AT1G05230	1179 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Potri.002G154700 [exp]	332 / 3e-103	AT4G00730	1057 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.014G075200 [exp]	325 / 3e-100	AT4G00730	1045 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.015G141800 [exp]	302 / 2e-92	AT4G00730	829 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.012G139300 [exp]	300 / 1e-91	AT4G00730	838 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.003G052400 [exp]	298 / 5e-91	AT1G79840	948 / 0.0	GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10020059 [exp]	414 / 7e-136	AT4G21750	1130 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10006765 [exp]	404 / 1e-131	AT4G21750	1152 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10018359 [exp]	395 / 3e-131	AT4G04890	805 / 0.0	protodermal factor 2 (.1)
Lus10039667 [exp]	403 / 5e-130	AT1G05230	1142 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Lus10027175 [exp]	400 / 7e-129	AT1G05230	1138 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Lus10007650 [exp]	395 / 6e-128	AT4G04890	1121 / 0.0	protodermal factor 2 (.1)
Lus10027437 [exp]	274 / 7e-82	AT3G61150	715 / 0.0	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10037554 [exp]	272 / 4e-81	AT1G79840	846 / 0.0	GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Lus10031321 [exp]	271 / 7e-81	AT1G73360	920 / 0.0	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Lus10031892 [exp]	265 / 1e-79	AT1G73360	618 / 0.0	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0209 [poplar] [flax]	Bet_v_1_like	PF01852 [poplar] [flax]	START	START domain

Representative CDS sequence

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>Potri.001G419500.3 pacid=42787600 polypeptide=Potri.001G419500.3.p locus=Potri.001G419500 ID=Potri.001G419500.3.v4.1 annot-version=v4.1

ATGGACATGTCCGAGTCGGAGGAGATCAGTCAAGATCAGGAGATAAGCAGTGATGAAGAAATGATGCGTCCTGATATCACTGATGCGAGCTCAGTCAATG

GTGATGGTTATAGTACTGATAGTGATTATAGTGAAATTGATGATACTGAAAATACGGAGAGTTCGGTTGAAGGGTTAGAGGAGATGAAGAGTACTACTGA

AGAGGAATTAGGGTTTGATCATGAAATAAATCCACAGGATGATAACATGATCCAAAATAATGGATATGTTCCATTCAATTCAGATAATTGTCAGCCCCCT

CAGCTTTCTCCTCGAAGTGAGGTTGAGTCCGTGTCATCCACAAACATGCCTTTGGAAATAAATGATCGAGCTAGTGACCTTTTAATGGCAGTCTCAGTTG

GTTCTGATGCAAACAAGAAAAAAATCAATGAGATGGCTGTTTCAGCCATGGACGAGCTAGTAAGAAAGTGCCTTGCAGGAGAACCTCTATGGCAGCACCG

ACAAGATTGTGACCTTGAGATTCTAAATGAAGGAGAATATATAAGAGAATTCCGTCCATTTGATGCAAGTCTAGGAGAGCTAATGAGAATAATTGAGATG

GAAGATCCTCAAAATCTTGCAAACTTATATGAGAGCAATGCAAGCACTAATGGAACTCAACACAAACCTATGTTTCAGCGAGATGCTGAAAAAAATTTCC

TTCAAACTGAAGCTTCACGACATATAGGGTTTGTTCGTATGGATGCTACCAGCCTTGTCGAGTGCCTCATGGATGTGAAGCAGTGGTCATCAGTTTTTTC

TAATATCGTCTCAAGAACAACTGTACTTGGAGTCTTGTCAAGAGGGGTAGCTGGGAACTACAACGAAACGTTACAAGTGATGAAGGCAGAGTTTCATATG

CCTACACCACTTGTTAATATTCGAGAGAGTCAGTTTGCAAGGTATTGTAAGCAGATAGGGCCTGGAACTTGGGGAGTTGTTGATGTATCCTTGGACAGTC

TATTCCCTTATCCACTAGTAATTTTTCGGAGAAGACCATCAGGGTGTTTAATCGTAGAAATGCCGGACGGATACTCTAAGGTTATTTGGGTTGAGCATGT

GGAAGTGGACAATAAATTTGTCCATAGAATGTTTTGGCCAATTGTTCTCCCTGGTTTTGCATTTAGCGCTATGCGTTGGGTTGCCAGCATAGTCCGACAT

TGTGAGCCAGTTGGGAATATAATCTCTACTTCCCTTGACAGTGCAACAATACCCCGAAATGGGAAAACAAGTGTGTTGAGGCTGGCTCGTAGAATGATGA

GAAGCTTTTATCATGACAACAGTGCTTCTACTGACAATTTTTGGGTCCGAATACATCTATGTGATGGTGAAGATTTTAGGTTAATGACTAAGACTATTTA

TGCCCTCAATGGAAGCCCTAGTTCGACTTTAGTTTTCACAACATCTCTTTGGGTTCCAGCTCCACCAAAGAGAGTCTTTGATTTTCTTCGCCATGGGGAT

TCTAGAAACAAGTGGGATTTGCTTGCCCGTGGATACGCAGTTCAAGAGATTATGCATATCATCAAGGGAGAAAGTCCGGAAAATCGTGTGTCTATCATGC

AAGTGAATTCTGCTCCGAACCAGATAGAAATCTTGTACTTGCAAGAAAGTTACAGCCATCCAACTGGATCGTACGTTGTTTATGCCCCAATAGACATTCT

TACTATGGGCATGATGCTGGGTGGTGGAAATTCAGATCTTGTTAATATTTTGCCATCAGGTTTTGTGATACATCCTGATGGGCCACTAAGGAATGGAGAG

GAAACTAGAGGAAGTCTTCTCACCCTTGCCTTTCACATTATGGATGGTTCATCCACGGAGGACTATCTTCCTGCTGCTGATTCTGTTAATACCATTCAGA

AAATCCTCACAGAAACTGCAACTTTGATCAAGACAGCTCTTTTATCTGACAATCTATAA

AA sequence

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>Potri.001G419500.3 pacid=42787600 polypeptide=Potri.001G419500.3.p locus=Potri.001G419500 ID=Potri.001G419500.3.v4.1 annot-version=v4.1

MDMSESEEISQDQEISSDEEMMRPDITDASSVNGDGYSTDSDYSEIDDTENTESSVEGLEEMKSTTEEELGFDHEINPQDDNMIQNNGYVPFNSDNCQPP

QLSPRSEVESVSSTNMPLEINDRASDLLMAVSVGSDANKKKINEMAVSAMDELVRKCLAGEPLWQHRQDCDLEILNEGEYIREFRPFDASLGELMRIIEM

EDPQNLANLYESNASTNGTQHKPMFQRDAEKNFLQTEASRHIGFVRMDATSLVECLMDVKQWSSVFSNIVSRTTVLGVLSRGVAGNYNETLQVMKAEFHM

PTPLVNIRESQFARYCKQIGPGTWGVVDVSLDSLFPYPLVIFRRRPSGCLIVEMPDGYSKVIWVEHVEVDNKFVHRMFWPIVLPGFAFSAMRWVASIVRH

CEPVGNIISTSLDSATIPRNGKTSVLRLARRMMRSFYHDNSASTDNFWVRIHLCDGEDFRLMTKTIYALNGSPSSTLVFTTSLWVPAPPKRVFDFLRHGD

SRNKWDLLARGYAVQEIMHIIKGESPENRVSIMQVNSAPNQIEILYLQESYSHPTGSYVVYAPIDILTMGMMLGGGNSDLVNILPSGFVIHPDGPLRNGE

ETRGSLLTLAFHIMDGSSTEDYLPAADSVNTIQKILTETATLIKTALLSDNL

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.001G419500 [exp]	0	1

Potri.001G419500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.001G419500 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.001G419500 coexpression network