Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27070 754 / 0 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G54810 751 / 0 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT5G28237 546 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT5G38530 120 / 4e-29 TSBtype2 tryptophan synthase beta type 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136000 [exp] 897 / 0 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) Potri.011G024900 [exp] 546 / 0 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Potri.017G109600 [exp] 121 / 1e-29 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011154 [exp] 784 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10043059 [exp] 781 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10018358 [exp] 520 / 0 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10007651 [exp] 451 / 2e-156 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10000306 [exp] 120 / 5e-29 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1) Lus10008278 [exp] 94 / 2e-23 AT5G28237 104 / 3e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G420300.1 pacid=42791300 polypeptide=Potri.001G420300.1.p locus=Potri.001G420300 ID=Potri.001G420300.1.v4.1 annot-version=v4.1 ATGGCAGCTACCACCACCACCGCCGCATCCATAACCACAGCAGCAGCAGCGTCCACCGCTGCAACCATCACCAAATCTCAATCTTCCTCTTTCCTCAAAC CCTACTCTTCTTCGCAGTTACCCTTCAAATTTTCCAAATTTACAGCATCTCGCGCACCTTCAAGGTTGGCAATTTCTTGCACTTTGGCCCGAGAGGCTGT GGTTAAAATGGAGGACGTGGTGGATTCTGACCCGGCCCAATGGCAACGACCCGATTCTTTTGGCCGGTTTGGTAAATTTGGCGGGAAATATGTACCTGAA ACCCTTATCCATGCACTCACTGAGCTTGAATCTGCTTTCCATTCCTTAAAAGATGACCCTGAATTTAAGAAAGAACTAGATGGGATATTGAAAGATTATG TTGGAAGGGAAAACCCTCTTTATTTTGCTGAGCGGCTTACAGAGCATTATAAGCGTCCTAATGGTGAAGGGCCTCATATTTATCTCAAGAGGGAAGATTT AAACCACACAGGTGCTCATAAGATTAATAATGCTATTGGCCAAGTCTTGCTAGCAAAGCGTTTGGGAAAGCAGCGGATAATTGCTGAAACTGGAGCTGGT CAGCATGGAGTTGCAACTGCTACCGTTTGTGCACGGTTCGGTTTTCCATGTGTTGTTTATATGGGCGCACAAGATATGGAAAGACAATCGCTTAATGTTT TCAGGATGCGTCTTCTTGGGGCTGAAGTGAGAGGAGTTCATTCTGGCACTGCAACCTTGAAAGATGCTACATCAGAAGCTATACGAGATTGGGTGACTAA CGTGGAGACAACCCATTATATTCTGGGATCTGTTGCAGGGCCACATCCTTTTCCCATGATGGTGCGAGAGTTCCATAGGGTTATTGGTATAGAAACAAGA AAACAGGCACTGGAAAAATGGGGTGGGAAGCCAGATGTGCTGGTTGCATGTGTTGGTGGTGGTTCAAACGCAATGGGACTCTTTGATGATTTCATTAAGG ACAAGGATGTTAGGTTGATTGGCGTGGAGGCTGCGGGTTTAGGAGTAGATAGTGGCAAGCATGCTGCCACTCTGACCAAAGGAGAAGTGGGGGTGTTGCA TGGAGCTATGAGCTATTTGTTACAAGATGAAGATGGACAAATAATTGAGCCTCATTCTATTAGTGCAGGGTTGGACTACCCTGGAGTTGGACCCGAGCAC AGCTTCTTGAAAGATAAAGGACGTGCTGAATACTATAGCGTCACAGATGAAGAAGCTTTGGATGCATTCAAGAGATTATCACGATTAGAGGGCATAATCC CTGCTTTGGAGACATCACATGCACTGGCGTATTTGGAGAATCTCTGCCCCACTCTCCCAGATGGAACAAAGGTGGTTCTTAACTGCAGTGGCAGAGGGGA CAAAGATGTTCAAACTGCCATAAAGTATTTGCAGGTTTAA
AA sequence Show only first row Show all	>Potri.001G420300.1 pacid=42791300 polypeptide=Potri.001G420300.1.p locus=Potri.001G420300 ID=Potri.001G420300.1.v4.1 annot-version=v4.1 MAATTTTAASITTAAAASTAATITKSQSSSFLKPYSSSQLPFKFSKFTASRAPSRLAISCTLAREAVVKMEDVVDSDPAQWQRPDSFGRFGKFGGKYVPE TLIHALTELESAFHSLKDDPEFKKELDGILKDYVGRENPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAIGQVLLAKRLGKQRIIAETGAG QHGVATATVCARFGFPCVVYMGAQDMERQSLNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPFPMMVREFHRVIGIETR KQALEKWGGKPDVLVACVGGGSNAMGLFDDFIKDKDVRLIGVEAAGLGVDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEH SFLKDKGRAEYYSVTDEEALDAFKRLSRLEGIIPALETSHALAYLENLCPTLPDGTKVVLNCSGRGDKDVQTAIKYLQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27070		TSB2	tryptophan synthase beta-subun...		Potri.001G420300 [exp]	0	1
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	11.44	0.9143
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.009G067300 [exp]	15.49	0.9131
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	18.65	0.9097
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	19.74	0.9080
AT1G42960			unknown protein		Potri.007G064100 [exp]	20.00	0.8177
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.007G072500 [exp]	20.97	0.9058
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	22.69	0.9081	Pt-PSBQ2.2
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	25.88	0.9014
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	26.15	0.9091
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.008G100800 [exp]	26.38	0.8256	LPD1,Pt-LPD.1

Compare expression of checked genes

Potri.001G420300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.