Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20550 298 / 3e-99 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT2G24410 86 / 1e-20 unknown protein AT5G38840 78 / 2e-15 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 51 / 7e-07 FHA SMAD/FHA domain-containing protein (.1) AT1G34355 47 / 3e-05 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136102 [exp] 252 / 7e-82 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 73 / 1e-13 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 54 / 1e-07 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 53 / 2e-07 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004278 [exp] 312 / 7e-104 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10019235 [exp] 290 / 2e-95 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 77 / 5e-15 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 69 / 3e-12 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 53 / 2e-07 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 52 / 7e-07 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.001G420400.1 pacid=42793672 polypeptide=Potri.001G420400.1.p locus=Potri.001G420400 ID=Potri.001G420400.1.v4.1 annot-version=v4.1 ATGGGGCGCAATTTATCCCAATCTCCACACAGGGATCGACATAGAAGCTCTCATAGAGATAGAGATGCTTCCCCAGTGAGAGAGAAACAACAACAACAAC AACAACGCTCTAGCCGCAGTAATAATAATAATAAATCTCCCAGGAAGCGGGAGATGTCTCCTCCTCTATCTCCTCCAGCAAGACACAAGAGCTCGCAAAA GGACCGCTCCCCAGTTGAAAAAGAGAGAAATTCAAATCGCGGGAGGTCTCCTTCGCCAAGAACGAAAAGATTAAGGAGATCCCAAGATGAGAAAGAGGGT GCAAAAATGAGAGATAGAGAGGTTGACAGGAATCACGACAAAAAGGGAAGCGAGAAGGGTGGCACACGAAGGGAAAGAGAGGGTGAGAGAGAAGATTATG AAAGGAGTCTTGGAAAGGGAGGCGATAAGGGTTTGCAAAGGGAGGGAGAAGCTGAGAGGAATCGTAGAGAAAGAGGAGAGAGGGAAGTTGGGAAGGAGAG AAGGTCAGAGAGGGATGAGATTGAAGGGAAGTCTTCTTCTAGAGGAAGACATAAGGGGCGGTCTACTTCACCATTGGAATCAGACCGTCGCAACAGGAGC AAGCATGGGTCTCGATCGCCGCTGCCTCAAACAGAGAGAGACCGCAATGAGGGGACAAACTCAAGGGGAGCTGAACAAAGGAATAGTGATGATGACAATT ATGATGATTCTGTGGCTAAGATGAAGGCTGCTGAGGAGGCTTTGGAAGTCAAGAAGAAGCAAGAACCTTCTTTTGAGCTATCTGGAAAGCTTGCTGCCGA AACCAATAGAGTTAGAGGTGTTACATTGCTGTTCACCGAGCCCCCAGATGCTAAGAAACCTAATGTAAGATGGCGACTTTATGTTTTTAAGGGTGGTGAG GCTCTGAATGAACCCCTTTATATACATCGTCAGAGCTGTTACCTTTTTGGGAGAGAAAGGAGGGTGGCAGATATTCCTACAGACCATCCATCATGCAGCA AGCAACATGCTGTTATTCAATTCCGGCAAGTAGAAAAGGAGCAGCCTGATGGCATGTTAAAAAAGCAAGTAAGGCCTTACGTAATGGACCTTGGAAGCAC AAATAAAACTTTCATTAATGATAATCCCATTGAACCTCAGCGTTATTATGAACTATTTGAAAAGGACACAATAAAATTTGGTAATAGTAGCCGAGAATAT GTACTGCTGCACGAGAACTCATCTGAATGA
AA sequence Show only first row Show all	>Potri.001G420400.1 pacid=42793672 polypeptide=Potri.001G420400.1.p locus=Potri.001G420400 ID=Potri.001G420400.1.v4.1 annot-version=v4.1 MGRNLSQSPHRDRHRSSHRDRDASPVREKQQQQQQRSSRSNNNNKSPRKREMSPPLSPPARHKSSQKDRSPVEKERNSNRGRSPSPRTKRLRRSQDEKEG AKMRDREVDRNHDKKGSEKGGTRREREGEREDYERSLGKGGDKGLQREGEAERNRRERGEREVGKERRSERDEIEGKSSSRGRHKGRSTSPLESDRRNRS KHGSRSPLPQTERDRNEGTNSRGAEQRNSDDDNYDDSVAKMKAAEEALEVKKKQEPSFELSGKLAAETNRVRGVTLLFTEPPDAKKPNVRWRLYVFKGGE ALNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLKKQVRPYVMDLGSTNKTFINDNPIEPQRYYELFEKDTIKFGNSSREY VLLHENSSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.001G420400 [exp]	0	1
AT5G25280			serine-rich protein-related (....		Potri.006G060800 [exp]	3.16	0.7931
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.015G104000 [exp]	4.89	0.7734
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.007G138700 [exp]	8.06	0.7803
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.018G107000 [exp]	8.83	0.7887
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.002G039801 [exp]	12.32	0.7726
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	12.76	0.7974
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	14.00	0.7727
AT5G53220			unknown protein		Potri.015G022500 [exp]	17.54	0.7654
AT5G67640			unknown protein		Potri.007G006000 [exp]	20.78	0.7627
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.001G062566 [exp]	25.76	0.7863

Compare expression of checked genes

Potri.001G420400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.