Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62230 166 / 2e-47 DAF1 DUO1-activated F-box 1, F-box family protein (.1) AT5G54820 154 / 5e-43 F-box/RNI-like superfamily protein (.1) AT3G29830 142 / 1e-38 F-box/RNI-like superfamily protein (.1) AT1G56400 140 / 3e-38 F-box family protein (.1.2) AT2G17305 109 / 1e-27 unknown protein AT3G03360 54 / 9e-08 F-box/RNI-like superfamily protein (.1) AT5G02930 52 / 4e-07 F-box/RNI-like superfamily protein (.1) AT5G02920 48 / 2e-06 F-box/RNI-like superfamily protein (.1) AT1G13570 44 / 7e-05 F-box/RNI-like superfamily protein (.1) AT5G03100 43 / 0.0001 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136200 [exp] 443 / 2e-155 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.001G322900 [exp] 61 / 6e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034733 [exp] 50 / 1e-06 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10003216 [exp] 42 / 0.0004 AT3G58860 51 / 3e-07 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G420500.2 pacid=42789510 polypeptide=Potri.001G420500.2.p locus=Potri.001G420500 ID=Potri.001G420500.2.v4.1 annot-version=v4.1 ATGAATCATGAAGCAGTATCTGAATTGCCTTCACATGTTTATGAACATGGCCAGGCTCTTGAATCCTTGAAGTTGTTTTCGTGCAGGTTTGATGCATCTA AGTTCACTAACTTTAGTGCAATAAAGAGCCTTTCTCTGGGGTGGATTAACATAAATATTGGATCTATTTTGGTTATATTGGAGAGTTGTCCATTGCTAGA GACTTTGCATCTGAAAAAGTGTTGGAACTTGGAATATTTTGAGGTATCCAAGCCAGGTTTGAGGCTACAAAACTTGGTTCTTGACAAATGTGATATTAGG CATGAATGGTTAGCAATTGAAGGACCAAGATTTCAATTCTTCAAGTACTCAGGAAAAGTGGGTCAATTTCTCTTGGAGAACCAACGTGACATGGTAGAGG CTGAACTTGATTTTGGGATGCAGACTGAATTTGAAGAAGTTGGTGCCTTCCTTTATGATCTCTTACAAGAGCTTTTTGCTGCTCGAATTCTGACTGTTTG CAGTGTCTTCTTACAGATTATTCCTAGCGGAGACGAACCATTGGGTTTGCAAGCTCCACTTGATGTCCGCAAGCTGATCTTGAAAACAGCACTGCACAGT AATGAATATTGTGGTATCAAGTTCATGCTAAGGAGCTCTCCTCGTCTAGAGACGCTTACCATAGACATTGGCCCTGCAAGAATTTTCCCAGATTATGAAC CTCCCTATCCATTTGACCCTGAGGAACTTTGGTCAAGGAACTTTCAAGTTGAATTTTGCGTCATTGAGACTCTTAGGGTGGTGAATGTGAAGGGATTTAA GGGCACAAGGAATGAACTGTATGTGCTGAGATACTTGCTCCACTTCGGCCGTGCAATGGAGGAACTTAATCTTTATGCCTCCAATGAAGGTGGCGATAAT GGCGAGAATAGGGAGTTCTATATGGGAAGAGCACAGATAGTCTTGGGATTCTACAAGGCATCTCGGAATGTAAGCATATCAGTCTTATAA
AA sequence Show only first row Show all	>Potri.001G420500.2 pacid=42789510 polypeptide=Potri.001G420500.2.p locus=Potri.001G420500 ID=Potri.001G420500.2.v4.1 annot-version=v4.1 MNHEAVSELPSHVYEHGQALESLKLFSCRFDASKFTNFSAIKSLSLGWININIGSILVILESCPLLETLHLKKCWNLEYFEVSKPGLRLQNLVLDKCDIR HEWLAIEGPRFQFFKYSGKVGQFLLENQRDMVEAELDFGMQTEFEEVGAFLYDLLQELFAARILTVCSVFLQIIPSGDEPLGLQAPLDVRKLILKTALHS NEYCGIKFMLRSSPRLETLTIDIGPARIFPDYEPPYPFDPEELWSRNFQVEFCVIETLRVVNVKGFKGTRNELYVLRYLLHFGRAMEELNLYASNEGGDN GENREFYMGRAQIVLGFYKASRNVSISVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62230		DAF1	DUO1-activated F-box 1, F-box ...		Potri.001G420500 [exp]	0	1
AT2G26530		AR781	Protein of unknown function (D...		Potri.009G068200 [exp]	2.44	0.8624
AT4G38040			Exostosin family protein (.1)		Potri.007G117800 [exp]	4.58	0.7515
AT5G52160			Bifunctional inhibitor/lipid-t...		Potri.015G139100 [exp]	5.19	0.8174
					Potri.016G130950 [exp]	7.21	0.7138
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.010G117400 [exp]	42.42	0.7453
AT3G21490			Heavy metal transport/detoxifi...		Potri.010G015300 [exp]	50.01	0.7336
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133800 [exp]	52.44	0.7263
					Potri.010G095050 [exp]	66.03	0.6871
AT1G70790			Calcium-dependent lipid-bindin...		Potri.010G110900 [exp]	87.26	0.6654
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.005G068801 [exp]	182.16	0.5925

Compare expression of checked genes

Potri.001G420500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.