Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54840 363 / 5e-127 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT3G21700 311 / 1e-106 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT2G44610 75 / 5e-16 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G39890 70 / 3e-14 AtRABH1c RAB GTPase homolog H1C (.1) AT4G19640 70 / 3e-14 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 69 / 6e-14 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT5G59150 69 / 7e-14 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT1G09630 69 / 9e-14 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G07410 68 / 2e-13 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT3G46830 67 / 3e-13 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136300 [exp] 511 / 0 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.014G152100 [exp] 317 / 2e-109 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.003G086700 [exp] 74 / 1e-15 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 73 / 3e-15 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.018G079300 [exp] 68 / 2e-13 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.016G000400 [exp] 68 / 2e-13 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 68 / 2e-13 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.005G075300 [exp] 68 / 2e-13 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.004G226600 [exp] 67 / 3e-13 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040044 [exp] 396 / 3e-140 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10019615 [exp] 393 / 6e-139 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10031559 [exp] 304 / 5e-104 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10039670 [exp] 303 / 9e-104 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 298 / 9e-102 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 288 / 7e-98 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10043349 [exp] 73 / 5e-15 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 73 / 5e-15 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10001026 [exp] 72 / 1e-14 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10004687 [exp] 70 / 4e-14 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.001G420700.1 pacid=42791158 polypeptide=Potri.001G420700.1.p locus=Potri.001G420700 ID=Potri.001G420700.1.v4.1 annot-version=v4.1 ATGTCCAAGATCGTTCATGAAAAGATGACACAACTTTGTGTAAAGATTGCTCATGGGAATAGCATCAAGTGGAGCATTCTTGAACGTGTAACTGTGTTTA AGCAGTTTTTTCATTTCATCTGGGACAAGATTCTTGCTTGCTCTATAGGCAAGCCTGCAAGGTACCGGAGGCTAACTTACAGATCGTGCTCTCCACCACC GGAGGCCATCGAAGCCGGTGTAGAGACGTCATTGGAGGCTGCAAGTTGTCGTGGGTTTAGCAAGGATTCGGATTTAGTCTCTTTGAAGATTAGTTTGTTG GGTGATTGCCAAATTGGTAAAACAAGCTTTGTGATAAAGTATGTGGGAGATGAGCAGGAGAAGAAATGCTTAGAGATGACAGGATTGAGTTTGATGGACA AAACATTATTTGTTCAAGGTGCAAGAATTTCATTTAGTATATGGGATGTAGCAGGTGATAGCAGTTCACTTGATCATGTTCCAATTGCATGTAAAGATGC AGTAGCAATACTGTTCATGTTTGATCTTACTAGCCGGTGTACTCTTAACAATGTGGTTGAATGGTACAATCAGGCAAGAAAATGGAATCAGACAGCAATT CCTATACTAATAGGGACCAAATTTGATGATTTTGTCCAACTCCCACCAAATTTGCAGTGGACAATAGTGACTCAGGCAAGGGCATATGCAAAGGCAATGA AGGCAACCCTTTTCTTTTCAAGTTCTAAACATAACATAAATGTGAACAAGATCTTCAAATTTATCATGGCTAAACTCTTTAACCTGCCATGGACAGTAGA GAGAAACTTGACAGTTGGAGAACCCATAATTGACTTCTAA
AA sequence Show only first row Show all	>Potri.001G420700.1 pacid=42791158 polypeptide=Potri.001G420700.1.p locus=Potri.001G420700 ID=Potri.001G420700.1.v4.1 annot-version=v4.1 MSKIVHEKMTQLCVKIAHGNSIKWSILERVTVFKQFFHFIWDKILACSIGKPARYRRLTYRSCSPPPEAIEAGVETSLEAASCRGFSKDSDLVSLKISLL GDCQIGKTSFVIKYVGDEQEKKCLEMTGLSLMDKTLFVQGARISFSIWDVAGDSSSLDHVPIACKDAVAILFMFDLTSRCTLNNVVEWYNQARKWNQTAI PILIGTKFDDFVQLPPNLQWTIVTQARAYAKAMKATLFFSSSKHNINVNKIFKFIMAKLFNLPWTVERNLTVGEPIIDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.001G420700 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Potri.010G197800 [exp]	5.47	0.6520	FPGS3,Pt-ATDFB.2
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	10.39	0.6792	RER1.4
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.015G062400 [exp]	11.13	0.6848	Pt-AR401.1
AT4G00585			unknown protein		Potri.014G079800 [exp]	11.48	0.6072
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	13.30	0.6856
AT2G22640		ATBRK1, BRK1, H...	BRICK1, putative (.1)		Potri.014G010000 [exp]	14.38	0.6205
AT3G60800			DHHC-type zinc finger family p...		Potri.003G115600 [exp]	28.98	0.5747
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.010G208900 [exp]	30.19	0.5863	Pt-RAB1.10
AT1G32050			SCAMP family protein (.1)		Potri.003G099300 [exp]	33.40	0.6769
AT3G07760			Sterile alpha motif (SAM) doma...		Potri.014G165300 [exp]	37.94	0.5500

Compare expression of checked genes

Potri.001G420700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.