Plant FIBer expression Database

Potri.001G420800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47860 428 / 8e-151 CHL chloroplastic lipocalin (.1)
AT5G58070 48 / 2e-06 ATTIL temperature-induced lipocalin (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037318
[exp]
426 / 5e-150 AT3G47860 417 / 2e-146 chloroplastic lipocalin (.1)
Lus10035734
[exp]
427 / 2e-148 AT3G47860 412 / 3e-142 chloroplastic lipocalin (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0116 Calycin PF08212 Lipocalin_2 Lipocalin-like domain
Representative CDS sequence
>Potri.001G420800.1 pacid=42792492 polypeptide=Potri.001G420800.1.p locus=Potri.001G420800 ID=Potri.001G420800.1.v4.1 annot-version=v4.1
ATGGTAAATGCTGTAAATGTTTATCATCATCATCAAACACCGCCAATTCTTCCACTTCAATGTCGCTCCTCTGCTCCTCCTCATTTCACCAGGGGAGTGC
CTGGAAAGCTTTTGTTAAAATGTTCATTTGAGAACACTACCTCAAGTGATGTTGCAGTAAGGCATGTGCTATCTGGATTTGCAGCCTCATTAATATTTCT
TTCCCAGACAAATCAGGTTCTTGCAGCAGATGTGTTTCAATCCCACAATATCTGCCAGCTCGCAAGCGCTGCAGAAAATAAAATAACCCCCCTTCCACTT
GATGACAGTTCTGGTGGAGGAATGGGAAAACTAATGATGATGAGAGCTATGACAGTTAAGGATTTTGATCCTGTCAGATATTCTGGAAGGTGGTTTGAAG
TAGCTTCACTAAAAGGTGGATTTGCTGGGCAAGGTCAAGGAGACTGCCATTGCACGCAGGGCGTGTATACATTAGATTTGGAAACACCAGCTATCCAGGT
AGATACCTTTTGTGTTCATGGAGGCCCTAGTGGTTACATCACAGGTATAAGGGGGAAGGTTCAGTGCGTGTCAGGGGACGATTTAGAGAAGCAAGCTACT
GAGCTAGAGAAGCAAGAAATGATTGCAGAGAAGTGTTACCTCCGTTTTCCAACCTTGCCATTTATCCCCAAGGAGCCTTATGACGTGATTGCTACTGACT
ATGATAACTTTGCTCTTGTTTCGGGAGCAAAAGACAAAAGTTTTATTCAGATATACTCAAGAACACCTAACCCTGGACCTGCATTCATTGAGAAATACAA
AGCTTATTTGGCAAACTTTGGGTATGATCCAAGCAAAATCAAGGACACCCCACAAGATTGTGAAGTTATGTCCAACAGTAAGCTTGCTGCCATGATGTCT
ATGCCTGGGATGCAAAAGGCACTTACAAATGAATTTCCTGATCTAGAATTAAGGAGCTCTGTCCAATTTAATCCCTTCACAAGCGTGTTTGATACTTTGA
AGAAGCTACTGGAGCTTTATTTCAAATAG
AA sequence
>Potri.001G420800.1 pacid=42792492 polypeptide=Potri.001G420800.1.p locus=Potri.001G420800 ID=Potri.001G420800.1.v4.1 annot-version=v4.1
MVNAVNVYHHHQTPPILPLQCRSSAPPHFTRGVPGKLLLKCSFENTTSSDVAVRHVLSGFAASLIFLSQTNQVLAADVFQSHNICQLASAAENKITPLPL
DDSSGGGMGKLMMMRAMTVKDFDPVRYSGRWFEVASLKGGFAGQGQGDCHCTQGVYTLDLETPAIQVDTFCVHGGPSGYITGIRGKVQCVSGDDLEKQAT
ELEKQEMIAEKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPNPGPAFIEKYKAYLANFGYDPSKIKDTPQDCEVMSNSKLAAMMS
MPGMQKALTNEFPDLELRSSVQFNPFTSVFDTLKKLLELYFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G47860 CHL chloroplastic lipocalin (.1) Potri.001G420800
[exp]
0 1
AT1G07320 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosom... Potri.006G221100
[exp]
3.16 0.9774
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.019G087300
[exp]
4.69 0.9750
AT1G31330 PSAF photosystem I subunit F (.1) Potri.001G081500
[exp]
4.89 0.9739
AT3G55330 PPL1 PsbP-like protein 1 (.1) Potri.010G210200
[exp]
9.74 0.9695
AT1G19150 LHCA2*1, LHCA2*... photosystem I light harvesting... Potri.006G139600
[exp]
10.58 0.9719 Lhca6,Pt-LHCA2*1.1
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.016G063500
[exp]
12.00 0.9561 TIF3.8
AT2G42220 Rhodanese/Cell cycle control p... Potri.006G059200
[exp]
13.03 0.9619
AT4G01150 unknown protein Potri.014G093900
[exp]
15.29 0.9624 CAM2.1
AT4G01150 unknown protein Potri.002G166800
[exp]
17.43 0.9635 CAM2.2
AT5G35630 ATGSL1, GLN2, G... GLUTAMINE SYNTHETASE LIKE 1, g... Potri.008G200100
[exp]
17.74 0.9589 Pt-NCPGS.8

Potri.001G420800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.