Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27060 884 / 0 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 708 / 0 ARM repeat superfamily protein (.1) AT2G07170 198 / 1e-52 ARM repeat superfamily protein (.1) AT1G27210 155 / 4e-39 ARM repeat superfamily protein (.1) AT1G59850 143 / 6e-36 ARM repeat superfamily protein (.1) AT5G62580 116 / 1e-26 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136700 [exp] 1559 / 0 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 187 / 3e-49 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 165 / 1e-42 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 161 / 3e-41 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 110 / 7e-25 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 104 / 9e-23 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011149 [exp] 1132 / 0 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 1126 / 0 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 1005 / 0 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019618 [exp] 680 / 0 AT4G27060 507 / 8e-171 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019616 [exp] 304 / 3e-96 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10027590 [exp] 189 / 1e-49 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10010730 [exp] 147 / 1e-36 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10008545 [exp] 132 / 3e-31 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10036675 [exp] 104 / 4e-23 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10033129 [exp] 97 / 1e-20 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G421200.1 pacid=42792701 polypeptide=Potri.001G421200.1.p locus=Potri.001G421200 ID=Potri.001G421200.1.v4.1 annot-version=v4.1 ATGAGTTCACAAGCACCCAAATCAAGTAAACCAACAAAACCCCAAAACCAAAACCAACCCACATCAAGATCCCCGTCCTTGTCAACCCATTTAGCCATGG TTGAACTCAAGCAAAGAATCATAACCTGTCTCTCTAAACTTGCAGACCGTGACACTCACCAGATCGCCCTTGAAGAACTTCACACAATAACACAAACAAT CTCTCCTGATGCGTTGCCAATGTTGCTAAACTCTCACTATGACTCACTTTCTGAAACCTCCAATTCAAAACCCTCGGTTAAGAAAGAATCTTTACATCTT CTTTCACTTGCTTGCCAATCTCATAGAGATTTAACATTGCCCCATTTGGCAAAAATCATTTCTTGCATTGTTAAAAGGCTTAAAGATTCAGATTCTAGTG TTAGAGATGCTTGTAGGGAAGCTATTGGGGTTTTATCAGGCTTGTATTTGAAGGGTAATGGTGGTGGTGGAGAAGGAGGTGGTGGTGGGGATGGTAATGG TGCGGGGCCTATGGTGGGGTTGTTTGTGAGACCTTTGTTTGAAGCAATGGGAGAGCAAAATAAAGTTGTGCAATCTGGAGCTGCTATGTGTATGGCGAAA ATGGTGGAGTGTGCTGCTGCAGAAGGGGATGATAGTGGTGGTAATGTGCCCATTGGGGCATTTCATAAGCTGTGTCCAAGGATTTGTAAGTTGCTGAATG GACAGAGTTTCCAGGCGAAAGCGGCTTTGTTGGGGGTAGTAACGAGTTTGTCTCAGGTGGGAGCAATTGCACCACAAGGTTTGGAATCATTGTTACAAAA CATTCATGACTGCCTTGGGAGCACAGATTGGGCTACACGTAAAGCTGCAGCTGATGCTTTAAGTGCTATAGCATTGCATTCAAGCCGCTTGATTGCAGAT GGAGCTGCAAATTCCACACTGACAGTGCTTGAAGCTTGTCGTTTTGACAAGATAAAACCCGTCAGAGATAGTATGACAGAAGCATTGCAATTATGGAAGA AAATTGCTGGTAAAGGAGAAGGTGTTCCTGATGACCAGAAAAGTTCCTCTCTGGATGGAGAGCGTCATGAACAAGCTGAGTTGTCAGATAAAAATCTAAA TCCTAATGACCAAAGAAAGGAGTCATCGGCAAGGGATGCATCCAATGGTACTTCCCCAACCAAAGATTCAGCATCAAAAAGCAAATACGGAAGCATTCAT GACAAAGCAGTTGTAATATTGAAGAAGAAAACTCCTGCTTTAACAGATAAAGAGTTAAACCTAGAATTCTTCCAGAAACTTGAAAAAAGGGGTTCTGGTG ATTTGCCAGTAGAAGTAGTTGTTCCTCGTAGATGTCTCGATTCTTCCAATTTGAACAACGAGGAAGAATCAGAACCAAATGATTCAGAATCAAGGGGGAG GCCAAACCGCATGGGAAACAGCCTATCAGATGATATTCATGGAGCTTTCAACAACAAATTCCGCAATATAGAAAGAGGAATTACTGGAAAAGATTTAAGA ACCAGAACATTTGATGATGAGAGGATTGACATAAACCATAGGGAGTCTTCTGGCAGTCGTGCAGGTTTCTCCAAATCTGATGGTCAATCTGAGGGATCCT TCATAAATAATAAAGGAAATTGGTTGGCCATCCAGAGACAGTTATTACAGCTGGAGAGACAACAGGCTCATCTCATGAACATGCTTCAGGATTTTATGGG GGGGTCTCACAACAGCATGGTAACATTGGAAAACAGAGTTAGGGGTCTTGAGAGAGTTGTTGAAGACCTGGCACATGATTTGACAATATCATCAGGCCGC AGAGGCAATAACTTTGCTATGGGTTTTGAGGGATCTTCTAATAGACCTTTAGGGAAGTATAATGGCTTCTCTGACTACTCTAGTTCAAAGTACAATGGGT GGGTTCCCCATGGGGAAAGATTTTCCCAATCGGATGTTACAGCTTCAGGCATGAGGGGAAGGGGCTCTCATTGGAGATCAGACACATCTGATGCTTGGGA ATTCCCCACATATGGAGCTTCCAGGAATGGACAGGCTGTCTCAAGGAGAGCTCCAGGCAGTGGTTCTTTGAATGTTAGATCACCTAAATCTGAACATGAA GGTGATCAGTTAGGCAACAGGAGAGCTTGGGAGAAAGGGGCAGGACCTGTTAGGCATGGTGAGGGACCTTCTGCTAGAAGTGTCTGGCAAGCCTCAAAGG ATGAAGCTACCTTAGAAGCCATTCGGGTGGCTGGGGAGGACAGTGGGTTAGCTCGGACAGCAAGAGTGACCATCCCTGAGATGACCGCAGAAGCTATGGG AGATGATAATGCTGGGCAAGAAAGGGACCCTATCTGGACATCTTGGAGTAATGCAATGGATGCCCTTAAAATGGGTGACATGGATACAGCTTATGCTGAA GTTGTATCCACAGGGGATGATCTCTTGCTTGTGAAGCTTATGGACAGATCAGGTCCTGTGGTTGACCAACTTTCCAATGAGACTGCATGCGAAGTCTTGA ATGCTATTGGACAGTTTCTAATGGAGCAGAACTTGCTTGACATATGTTTGTCTTGGATTCAGCAGTTGGCAGAAATAGTGTTAGAAAATGGATCCCATGT CTTTGGCATTCCCATGGAACTGAAGAAAGATATTTTGCTGAATTTGCATGAAGCTTCTACCTCCATGGAGCCCCCAGAGGACTGGGAAGGTGCAGCACCC GACCAACTTTTGTTGCAACTGGCATCTGCCTGGGGAATTGAAATACAACAGTTTGAGAAGTAA
AA sequence Show only first row Show all	>Potri.001G421200.1 pacid=42792701 polypeptide=Potri.001G421200.1.p locus=Potri.001G421200 ID=Potri.001G421200.1.v4.1 annot-version=v4.1 MSSQAPKSSKPTKPQNQNQPTSRSPSLSTHLAMVELKQRIITCLSKLADRDTHQIALEELHTITQTISPDALPMLLNSHYDSLSETSNSKPSVKKESLHL LSLACQSHRDLTLPHLAKIISCIVKRLKDSDSSVRDACREAIGVLSGLYLKGNGGGGEGGGGGDGNGAGPMVGLFVRPLFEAMGEQNKVVQSGAAMCMAK MVECAAAEGDDSGGNVPIGAFHKLCPRICKLLNGQSFQAKAALLGVVTSLSQVGAIAPQGLESLLQNIHDCLGSTDWATRKAAADALSAIALHSSRLIAD GAANSTLTVLEACRFDKIKPVRDSMTEALQLWKKIAGKGEGVPDDQKSSSLDGERHEQAELSDKNLNPNDQRKESSARDASNGTSPTKDSASKSKYGSIH DKAVVILKKKTPALTDKELNLEFFQKLEKRGSGDLPVEVVVPRRCLDSSNLNNEEESEPNDSESRGRPNRMGNSLSDDIHGAFNNKFRNIERGITGKDLR TRTFDDERIDINHRESSGSRAGFSKSDGQSEGSFINNKGNWLAIQRQLLQLERQQAHLMNMLQDFMGGSHNSMVTLENRVRGLERVVEDLAHDLTISSGR RGNNFAMGFEGSSNRPLGKYNGFSDYSSSKYNGWVPHGERFSQSDVTASGMRGRGSHWRSDTSDAWEFPTYGASRNGQAVSRRAPGSGSLNVRSPKSEHE GDQLGNRRAWEKGAGPVRHGEGPSARSVWQASKDEATLEAIRVAGEDSGLARTARVTIPEMTAEAMGDDNAGQERDPIWTSWSNAMDALKMGDMDTAYAE VVSTGDDLLLVKLMDRSGPVVDQLSNETACEVLNAIGQFLMEQNLLDICLSWIQQLAEIVLENGSHVFGIPMELKKDILLNLHEASTSMEPPEDWEGAAP DQLLLQLASAWGIEIQQFEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	0	1
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	1.00	0.9236	ALPHA.13
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	3.46	0.9094
AT5G13260			unknown protein		Potri.003G164100 [exp]	7.74	0.9084
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	8.83	0.9064
AT3G51580			unknown protein		Potri.006G108400 [exp]	10.39	0.9035
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	11.22	0.9003
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	13.41	0.9044
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	14.49	0.9040	SYP131.2
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	15.87	0.8779
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	16.00	0.8999

Compare expression of checked genes

Potri.001G421200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.