Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20540 1111 / 0 PolIB, POLGAMMA1 polymerase I B, polymerase gamma 1 (.1.2) AT1G50840 1109 / 0 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1) AT4G32700 92 / 2e-18 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136900 [exp] 1734 / 0 AT1G50840 1109 / 0.0 polymerase I A, polymerase gamma 2 (.1) Potri.018G036600 [exp] 84 / 5e-16 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019619 [exp] 1191 / 0 AT3G20540 1212 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10040048 [exp] 968 / 0 AT3G20540 999 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10040049 [exp] 179 / 4e-48 AT3G20540 163 / 3e-43 polymerase I B, polymerase gamma 1 (.1.2) Lus10022115 [exp] 76 / 2e-13 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10007673 [exp] 56 / 1e-07 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00476 [poplar] [flax] DNA_pol_A DNA polymerase family A CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Potri.001G421300.1 pacid=42793655 polypeptide=Potri.001G421300.1.p locus=Potri.001G421300 ID=Potri.001G421300.1.v4.1 annot-version=v4.1 ATGGGAATCACCTCCACCACCACTCAAATCAGTCCTTTTAGACCAATATGCCCTTCTTATTTCAAGTTATCTCGCTCTTGTCCTTGCTTTGCCTCCAGGG AAGGTTCTTCTAGGCCTTTCTCTGTTGCCCTTCACAGGTTTTGGGGGAAAATCCCTTTGCAAGTGATTGATGACATGCAAAAGAGAGATGAGAAGAGGAG GGTGGTTTCAAGAAATTCTAATGCGCCTCCTGGTCTTGAGTTCACTACGATCCTTCGTGATGGTACTAGAGCTTTATGGAAACAGGAGAGTAATGAACTG TTGAAGCAGAAATGTGAATATGATGGTAGTGTTTATTCATTTAAATATGAAAGGATGGATATTAATGCAATACAAACACAAGATAAACCTAAGAGTCAGA AACAACTAATTTCCAGGAATGTTGGTCAGCTGGTTGATAACAAAAGGCCAAATGGTTCATCTTTGGATGACATTTTAAAAGAGAGTGCGTGGAATAATGG ATCATTCATGCAGAGAATGGAGAATGAAAAGCAGTTCCAGTCTAGTGAACTTGGACACACAGGTATTGGTTCAAATGAGCAAGTCCAGACCAAGGGAAGG CCTCACAAGCTAGACATTCGTGAGAGGCTTACTAGTATATATGAGAGTGTACTGGTTGTTGATAATGTCACTATGGCAAAGGAGGTTGTTAGTAAGCTTA CAAATCAGTATAGGCATCTTATCCATGCTTGCGATACTGAGGTTGCCAGAATTGATGTGAAAGAGGAAACACCCATTGACCATGGAGAGATAACATGTCT CAGTATTTATTGTGGACCAGAGGCAGATTTTGGACACGGGAAATCTTGTATCTGGGTAGATGTTCTTGATGGTGGAGGCAGGGATCTTTTGAATGAATTT GCTCTGTTTTTTGAAGACCCGGACATAAAAAAGGTGTGGCACAACTACAGCTTTGATAACCACGTCATCGAGAACTACGGGTTTTCTGTTTCTGGTTTTC ATGCTGATACAATGCACATGGCACGATTATGGGATTCATCAAGAAGATTAAAGGGTGGGTATTCTCTTGAAGCTCTTACAGGTGATCAAAAAGTCATGCG TGGGGCAGGATCATGCTATAAAGAATTGATTGGTAAAGTGTCAATGAAAACCATCTTTGGCAAGAAAAAGTTGAAAAAAGATGGATCTGAAGGCAAAATG ACCATCATTGCCCCTGTTGAAGAGTTACAAAGAGAAGAGCGAGAACCGTGGATTTGTTATTCTGCTTTGGATGCAATAAGCACTTTGCAGCTTTATAAGA GCATGGAAAGCGAACTATCTAAAATGCCTTGGAATTTGGATGGAAAACGTGTTTTTCAAAAATCTATGTTTGACTTCTACCAGGAATACTGGCAACCATT TGGGGAGATTCTAGTTAGAATGGAAACCGAGGGCATGCTGGTTGACCGGGCATATCTTGCTGAGGTGGAGAAGGTTGCCAAAGCAGAACAGGAGGTTGCT GCTAACAGATTTCGTAATTGGGCTTGTAAGTATTGCCCTGATGCCAAGTACATGAATGTGGGAAGTGATACACAACTGCGCCAATTACTTTTTGGTGGTG TTCCGAACAGTAAGGATCCTCTCCTTACTCTTCCAGAAGATAAAACATTCAAAGTTCCAAATGTTGATAAAGTGATTGAAGAAGGCAAGAAGACTCCCAC AAAATATCGCAACATTAAGTTATGTAGCATTGGAGTTGATCTGCCTATTGAGACATATACCGCAAGTGGTTGGCCTTCAGTCAGTGGAGTTGCTTTGAAG GCCTTGGCTGGGAAGATTTCTGATGCTGTTAGCGATGCCAATGATGCTGCTGGCTTGCAGTTAGATGATGCTGTCTTGGATGATTCTGGGACAATGACAG ATGAAGATTCAAATTCCGAAGGGTCCTATGTTGAGAATAAAGTAGAATCTGAGTATGTAGCAGGTTTGCGTAGGTTTCAAACACCAGAAGAAGGGATTGA GGCCTGTCATGCTATTGCTTCTTTATGTGAAGTTTGCTCTATTGATTCTTTGATATCCAACTTCATCCTCCCCCTGCAGAGCAGCGACATATCAGGCAAG GGTGGGCGTGTTCACTGTTCTCTGAATATCAATACAGAAACCGGGCGCTTATCAGCTAGGAGACCAAATTTGCAGAATCAGCCTGCTTTGGAGAAAGACC GGTATAAGATCCGTCAGGCATTTATAGCTGCACCTGGGAATTCACTTATTGTTGCTGATTATGGGCAACTGGAACTTAGGATTCTTGCACATCTTGCCAA CTGTAAGAGCATGTTGGATGCCTTTAAAGCTGGTGGAGATTTCCATTCAAGGACAGCTATGAACATGTATCCGCATATTCGTGAGGCCATTGAGAAAAAG CAAGTGCTTCTTGAGTGGTATCCTCAACCTGGTGAAAACAAACCCCCCGTTCCATTACTTAAGGATGCCTTTGCTTCTGAAAGAAGAAAAGCTAAAATGC TTAACTTTTCTATTGCTTATGGAAAGACTCCTGTGGGGCTTTCCAGGGATTGGAAGGTTTCTGTGGCGGAAGCAAAGGAAACTGTTAATCTCTGGTATAA AGAAAGAAAAGAAGTGCTTAAATGGCAACAAGCTCGTAAGAAAGAAGCCAGAGAAAATGGACGTGTTTACACATTGCTGGGACGGGCTCGTGTCTTTCCT TCATTGACTGATGCTAGCTCTTCTCTAAGAGGTCATGTTGAGCGGGCTGCTATCAATACCCCAGTGCAGGGTAGTGCTGCAGATGTTGCTATGTGCGCTA TGCTAGAAATATCAAAGAACACACGTCTGCAGGAACTTGGATGGAAGCTGCTTTTACAGGTTCATGATGAAGTGATCCTGGAAGGACCAACTGAGTCAGC TGAGGTTGCCAAGGCAATAGTTGTTGGGTGCATGTCTAAACCCTTTGGTGGCAAGAATTTTCTTAATGTGGACCTGGCTGTTGATTCAAAGTGTGCTCAA AACTGGTATGCTGCTAAATAG
AA sequence Show only first row Show all	>Potri.001G421300.1 pacid=42793655 polypeptide=Potri.001G421300.1.p locus=Potri.001G421300 ID=Potri.001G421300.1.v4.1 annot-version=v4.1 MGITSTTTQISPFRPICPSYFKLSRSCPCFASREGSSRPFSVALHRFWGKIPLQVIDDMQKRDEKRRVVSRNSNAPPGLEFTTILRDGTRALWKQESNEL LKQKCEYDGSVYSFKYERMDINAIQTQDKPKSQKQLISRNVGQLVDNKRPNGSSLDDILKESAWNNGSFMQRMENEKQFQSSELGHTGIGSNEQVQTKGR PHKLDIRERLTSIYESVLVVDNVTMAKEVVSKLTNQYRHLIHACDTEVARIDVKEETPIDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLNEF ALFFEDPDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSRRLKGGYSLEALTGDQKVMRGAGSCYKELIGKVSMKTIFGKKKLKKDGSEGKM TIIAPVEELQREEREPWICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVRMETEGMLVDRAYLAEVEKVAKAEQEVA ANRFRNWACKYCPDAKYMNVGSDTQLRQLLFGGVPNSKDPLLTLPEDKTFKVPNVDKVIEEGKKTPTKYRNIKLCSIGVDLPIETYTASGWPSVSGVALK ALAGKISDAVSDANDAAGLQLDDAVLDDSGTMTDEDSNSEGSYVENKVESEYVAGLRRFQTPEEGIEACHAIASLCEVCSIDSLISNFILPLQSSDISGK GGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIREAIEKK QVLLEWYPQPGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLLGRARVFP SLTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQVHDEVILEGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVDSKCAQ NWYAAK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Potri.001G421300 [exp]	0	1
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	2.23	0.8940	Pt-DEGP2.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	4.24	0.8757	Pt-BRI1.2
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	4.58	0.8683
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	5.19	0.8803
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.015G034100 [exp]	6.70	0.8764
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.018G031800 [exp]	6.78	0.8324
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	7.07	0.8819
AT5G55960			unknown protein		Potri.001G370500 [exp]	8.12	0.8401
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	12.00	0.8657
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Potri.015G143000 [exp]	15.49	0.8509

Compare expression of checked genes

Potri.001G421300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.