Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54930 103 / 4e-25 AT hook motif-containing protein (.1.2) AT4G21895 80 / 3e-17 DNA binding (.1) AT5G52890 79 / 5e-16 AT hook motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138700 [exp] 454 / 3e-159 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2) Potri.004G017000 [exp] 86 / 2e-18 AT4G21895 96 / 2e-22 DNA binding (.1) Potri.011G001901 [exp] 70 / 4e-13 AT4G21895 74 / 5e-15 DNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016478 [exp] 121 / 8e-32 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2) Lus10040754 [exp] 119 / 2e-31 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2) Lus10002064 [exp] 82 / 8e-17 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2) Lus10001140 [exp] 81 / 9e-17 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G422966.2 pacid=42793651 polypeptide=Potri.001G422966.2.p locus=Potri.001G422966 ID=Potri.001G422966.2.v4.1 annot-version=v4.1 ATGAGTGAAGCAAACCAAGGGAATAATCCTGATGCTTCAGCAATTGTCCCTCTGAAACGCAGGCGTGGGCGTCCACGCAAGTACCCTAAAATGGAGGTTG ATCATGTGGCGAATGCACATGTTAACGTTCCAGGGATTCAAAATCTAAACCATGGAGAGAATGCTCATGCTCCTCCTGGATTTGGAGTGGTCAATAGTAA TCAGCCACATCAAGTAGGTCCAGTTAACAATGCAATTGATGCCATGATAGGCCAGTCAGTGTATGGTGTCATAGAAGCAACATTTGATGCTGGATATTTG CTGAATGTCAGGGTTGGTGATACAGAAACCACTTTGAGGGGTGTTGTTTTTAAGCCTGGACATTACATCCCTGTTAATCCAGAAAATGATATTGCCCCAG ATGTTCCAATGATCAGAAGGAATGAGATTCCCCTTACGAGAGAAAGCAATAATCAGGTGCTTTCAGTGGTACCCCAAACTCCTCCAATATCAAGAGGCAA TGTAGTTCCTGTTGTACTTCAGCCAGTCAATCTATCAAATGGTGCACTGAGTGCCAGTGCCACAAACCAAACTGCTCATCTGGTGCCTTCAAAAGGCAAG CAGGTTCTAGATGCTGCTCCTTCATCAAATGGATTAACACCAACAAATGAGATTATACAATTTCAATCTCAAAATAACCACCAGGTGATAACAAGTCCCT TTAATCAAAATCCAGCAGGGGGACTGCATGAATCAGAAGTCAGCCCGATGAAAACAACACATATGCCTTTTGAGAAACTGTTAACTGAAGTCATCAGGAG GGTTCATGCTCCATCACAATCAACAGAGACTAATAGCAGCTTAGCTGTTAACTTGCCTGTGGAAGATTCTGGTATTGTGGAAAAAAAGGATGGCAGTGAC ACAGAACAGGCCCTGTCAGTTAAACCGCTGCAAGTTTTACAGCCTATTGTTGACAGCCATCCTGCAGTTGCATCTATACCTTCTGAGGACTACAAGACTG GCAAAATGACTCAGCTCTTGCAGGAAAACATGACATTCTGA
AA sequence Show only first row Show all	>Potri.001G422966.2 pacid=42793651 polypeptide=Potri.001G422966.2.p locus=Potri.001G422966 ID=Potri.001G422966.2.v4.1 annot-version=v4.1 MSEANQGNNPDASAIVPLKRRRGRPRKYPKMEVDHVANAHVNVPGIQNLNHGENAHAPPGFGVVNSNQPHQVGPVNNAIDAMIGQSVYGVIEATFDAGYL LNVRVGDTETTLRGVVFKPGHYIPVNPENDIAPDVPMIRRNEIPLTRESNNQVLSVVPQTPPISRGNVVPVVLQPVNLSNGALSASATNQTAHLVPSKGK QVLDAAPSSNGLTPTNEIIQFQSQNNHQVITSPFNQNPAGGLHESEVSPMKTTHMPFEKLLTEVIRRVHAPSQSTETNSSLAVNLPVEDSGIVEKKDGSD TEQALSVKPLQVLQPIVDSHPAVASIPSEDYKTGKMTQLLQENMTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54930			AT hook motif-containing prote...		Potri.001G422966 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	8.54	0.8540	HMGB906,ATHMG.1
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	8.94	0.8517
AT4G37020			unknown protein		Potri.007G043200 [exp]	10.24	0.8485
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G290900 [exp]	10.48	0.8402
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.004G139900 [exp]	11.40	0.8063
AT2G28230			TATA-binding related factor (T...		Potri.006G143400 [exp]	13.96	0.7944
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	14.96	0.8338	FIM1.1
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	16.61	0.8380
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	17.23	0.8306
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	20.00	0.8415

Compare expression of checked genes

Potri.001G422966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.