Plant FIBer expression Database

Potri.001G423200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54920 253 / 3e-77 unknown protein
AT4G26990 233 / 6e-70 unknown protein
AT3G14010 70 / 2e-12 CID4 CTC-interacting domain 4 (.1.2.3.4)
AT1G54170 59 / 7e-09 CID3 CTC-interacting domain 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G138600
[exp]
830 / 0 AT5G54920 148 / 1e-38 unknown protein
Potri.001G171100
[exp]
67 / 1e-11 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4)
Potri.003G063000
[exp]
64 / 2e-10 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040755
[exp]
387 / 5e-129 AT5G54920 269 / 6e-84 unknown protein
Lus10016477
[exp]
353 / 4e-116 AT5G54920 271 / 5e-85 unknown protein
Lus10015638
[exp]
76 / 3e-14 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4)
Lus10037656
[exp]
74 / 1e-13 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0527 Sm-like PF14438 SM-ATX Ataxin 2 SM domain
Representative CDS sequence
>Potri.001G423200.1 pacid=42789538 polypeptide=Potri.001G423200.1.p locus=Potri.001G423200 ID=Potri.001G423200.1.v4.1 annot-version=v4.1
ATGGGTTACAAAAACAGAGCAGAAGCTGAAACAGAGGCATGCTTAAACGAGGCTTTATTGTTTGCTACTATGTGTATAATTGGACTCCCTGTTGATGTGC
ATATTAGAGATGGTTCTGTTTACTTTGGGACTTTTCACACTGCTTCTTTTGACAAGGAAAACGGTATTGTTTTGAAGGAAGCAAGATTGACTAAAAAGGG
AAAATCCAGTGCAAATGTAGGTAATGGGAGTGTGATAGAGACACTTGTAATTCTTTCAGTTGATATTGTTCAAGTTGTTGCTAAGGGAGTTCTATTTCCA
GCTGATGGTGTCGCTGCAAATATATCTGGTGACAATGCAGAAGCTGCTGTAACCAATGCTTCATCTTCTGAGATTGCAGTGAGCGAGGCAAAGAAATCTA
ACATGTTCACTGTGGATAGAAAGAAATCTAATCAAAACAGGGGTTCAGCCAAAAACAAGAACGGTTCTTCTCAAGGTCTTATGCTGACAAGAGCAGTGAA
GGATCATGAAGGGAGAAAAATGCCACCAAATGACATAGGAAATGTCATGGAATTTGAACATGGGAAAAGAGATGGTGTAAATATCTCAAAGAGAGAAGCT
TCTTCTGGTGACTCAGTTAATGGAAGGCAGACTGGAGAAGACTGGTCACAGGGGGAGCAGGATCTCTATAAACATAAGTTTGAGTTTCAAAGGGAAAAGA
GTGCTGATGAAGTTCATAGCCCAAATGCAATCACAGGGCCTCACCTCAGTGAAGCAAAACCCGTTGCAGAAGGGCGAGTAACAGTGAAGCTGTTGCCTAA
CGGTGTATCTTGTAATTCTGCTGGCGAGCTTATGAAGCCAGACAATCAATACCGTGGAAGGCCTGCTTCTGTGGGAACCACTTCTCCTATTGCTGTTTGT
GCAAGTGTTTCAACTTCTTCCAATCCAACGGTTGATGTTCCTTCAGAATCACTCTGTAGTTCATTAGCAAATTCTACTGATGCAGTCTCTCCACGAATCT
CAGAATCTAATAGAAGCTCCAAGGCATTCAAGCTCAATCCAGGAGCAAAAATTTTTTCTCCATCTTTTTCCAATCCTATATCAGCTACTGCTCCAGCAGT
GCCAACTGCTGCAAGCATGGCTTACATATCAAGCAACTCTCCAGCGGTACCTGTTGCTGTTGTGCAGCCAGAAGTTGGGATCCCTTTTGCACCTCGTTCA
TCTGTCCCTGCTAAGTACCCCCCCTATAGCAACTTGACAGCGGTAAATGGTGGCAGTGGTTCTCAATTTTTGCAACCTGTTGTTGGACACATGGGAAGCA
GAGCACAGCCACAGCCACTTAGATATTCTGGTCAGTATCATGCTGTTCAGGCAGCACCAGCATTTGTGCCTCCAAATTCTCAATCTGTTATGGTTGGACA
ACTGGGGCAGCTCATGTATATTCAGCCAGTTTCTCATGATTTGGTTCCAAGCGCAGCAGCCATATCATCTGTATCTGCACGTCCTATGTCAACTCCTCAC
CAAGTCCAATATCCTAAACACCAAGGAAGTGCAGCCGGCCAAACCTTGCAGCTCTGTGTGGCTCCACCTTTTGTAGCTGGTGGACAACAACCATTTGTAA
TGCCAAGCCATATTCCTTTTCTTCAGCCACCTATCCCTGCAATTCGCCCCATTCCAGTCCCAGGATCCAATACTCTTTTCAACACCAAGTTTCCATGA
AA sequence
>Potri.001G423200.1 pacid=42789538 polypeptide=Potri.001G423200.1.p locus=Potri.001G423200 ID=Potri.001G423200.1.v4.1 annot-version=v4.1
MGYKNRAEAETEACLNEALLFATMCIIGLPVDVHIRDGSVYFGTFHTASFDKENGIVLKEARLTKKGKSSANVGNGSVIETLVILSVDIVQVVAKGVLFP
ADGVAANISGDNAEAAVTNASSSEIAVSEAKKSNMFTVDRKKSNQNRGSAKNKNGSSQGLMLTRAVKDHEGRKMPPNDIGNVMEFEHGKRDGVNISKREA
SSGDSVNGRQTGEDWSQGEQDLYKHKFEFQREKSADEVHSPNAITGPHLSEAKPVAEGRVTVKLLPNGVSCNSAGELMKPDNQYRGRPASVGTTSPIAVC
ASVSTSSNPTVDVPSESLCSSLANSTDAVSPRISESNRSSKAFKLNPGAKIFSPSFSNPISATAPAVPTAASMAYISSNSPAVPVAVVQPEVGIPFAPRS
SVPAKYPPYSNLTAVNGGSGSQFLQPVVGHMGSRAQPQPLRYSGQYHAVQAAPAFVPPNSQSVMVGQLGQLMYIQPVSHDLVPSAAAISSVSARPMSTPH
QVQYPKHQGSAAGQTLQLCVAPPFVAGGQQPFVMPSHIPFLQPPIPAIRPIPVPGSNTLFNTKFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54920 unknown protein Potri.001G423200
[exp]
0 1
AT4G02010 Protein kinase superfamily pro... Potri.014G119100
[exp]
4.47 0.7396
AT1G55520 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTE... Potri.019G033300
[exp]
9.79 0.7308 TBP1.2,GTF902
AT2G03640 Nuclear transport factor 2 (NT... Potri.008G096700
[exp]
11.40 0.7164
AT3G19650 cyclin-related (.1) Potri.001G295000
[exp]
11.74 0.6581
AT3G07660 Kinase-related protein of unkn... Potri.002G217000
[exp]
12.36 0.7040
AT4G33650 APEM1, DRP3A, A... ABERRANT PEROXISOME MORPHOLOGY... Potri.007G118300
[exp]
12.48 0.7405
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
13.30 0.7663
AT4G10750 Phosphoenolpyruvate carboxylas... Potri.001G084900
[exp]
17.32 0.6461
AT2G24230 Leucine-rich repeat protein ki... Potri.006G185100
[exp]
19.07 0.7333
AT3G01100 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETI... Potri.004G115800
[exp]
19.49 0.6554 HYP1.1

Potri.001G423200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.