Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54910 858 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 333 / 3e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 330 / 5e-103 DEA(D/H)-box RNA helicase family protein (.1) AT1G71370 246 / 3e-72 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 234 / 1e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 228 / 8e-66 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 231 / 7e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 229 / 8e-64 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40700 221 / 1e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 206 / 2e-58 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045300 [exp] 340 / 3e-107 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 337 / 3e-106 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 248 / 2e-72 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 229 / 3e-64 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G169800 [exp] 228 / 5e-64 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G059100 [exp] 217 / 2e-61 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 214 / 2e-61 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 200 / 1e-56 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 200 / 4e-56 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012172 [exp] 1020 / 0 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007574 [exp] 1009 / 0 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009616 [exp] 336 / 1e-105 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 336 / 2e-105 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 334 / 8e-105 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 268 / 2e-81 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009838 [exp] 236 / 5e-68 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 236 / 7e-68 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012874 [exp] 226 / 2e-64 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 234 / 3e-64 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF13959 [poplar] [flax] DUF4217 Domain of unknown function (DUF4217)
Representative CDS sequence Show only first row Show all	>Potri.001G423300.1 pacid=42793740 polypeptide=Potri.001G423300.1.p locus=Potri.001G423300 ID=Potri.001G423300.1.v4.1 annot-version=v4.1 ATGAGAAAATCAAAACCAAAGTCTAAACAAACAAGAAGGGATCGTCATGAAGCAGAACAGGAAGAAATCTCCAAGCTAAACCAATGGATAGACTCACAAA AACCAGACTCAGGGACCAACCCTTTATCACTCCCACCACTACCAAAAGATGCACCAATTGGGCCCCTTCAAGATGATAAATTTTCAAGATATTCAGGGGC TACAATGTTCAAGGAATTGCCTTTGTCAAAGAGAACGCAAGATGGGTTAAAGAGAGCGAATTTTTCTAAAATGACTGATATACAAAGGGCTTCTTTGCCT CATTCTCTTTGTGGAAGGGATATTCTTGGTGCTGCTAAAACTGGGTCTGGCAAAACACTCGCTTTTATTATTCCTATTTTGGAAAAATTATATAAAGAAA GATGGGGTTCCGAGGATGGAGTAGGCGGCATCATTATCTCTCCCACAAGGGAATTAGCAGGGCAGCTTTTTGATGTATTGAAAACTGTTGGGAAGTTCCA TAACTTTAGCGCTGGACTACTCATTGGTGGTCGAAAGGAAGTGGAAATGGAGAAAGAGCATGTTAATGCTCTGAACATATTAGTTTGCACTCCTGGAAGA CTTCTTCAGCATATGGACGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTGGTCCTTGATGAGGCAGATCGTATTCTTGATGTTGGATTTAAGA AGACTCTGAATGCAATTGTCGCACAGCTACCTAAGCGTAGACAAACATTGCTTTTCTCTGCAACTCAAACAAAGTCCATTCAGGATCTTGCAAGACTGAG TTTGAAGGACCCAGAGTATATCAGTGTGCATGAAGATGCTGAGACAGCAACTCCCAGCCGCCTGCAGCAAACTGCAATGATTGTTCCTCTTGAGCAGAAG CTAGATATGCTATGGAGTTTTGTAAAAGCTCATCTTAACTCAAAGATTCTTGTGTTTCTTTCTAGCTGCAAACAGGTGAAATTTGTCTTTGAAGCATTTA AGAAACTACGGCCTGGAATCCCATTGAAGTGTCTCCATGGAAGGATGAAGCAGGAGAAAAGGATGGGAATTTATTCTCAGTTCTGCGAAAGTCATTCAGT TCTCTTCTCAACTGATGTAGCCTCCAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTCCAGGTAGATTGTCCAGATGATGTTGCATCCTACATA CACAGGGTTGGTCGCACAGCACGCTATCTGGCTGGAGGAAGGTCAGTTTTGTTTCTGATGCCTTCAGAAATGAAAATGCTTGAAAAATTGCAAACAGCAA AAATTCCCGTACAGTTTATTAAGGCAAATACAAAAAGACTGCAGCCAGTTTCTGGATTGTTGTCAGCTTTACTAGTCAAGTATCCTGATATGCAGCAGCT AGCTCAGAGGGCCTTCATAACATATTTGCGATCTATACATATACAGAAGGACAAAGAAGTGTTTGATGTTTTGAAGCTATCTATTGAAGAATTTTCAGCT TCATTGGGTCTACCTATGACCCCAAAAGTCCGTTTTCTGAACCAGAAAATAAAAGGGAAAAAGGCATTTGGAAAATCTGCTCTTCTCGAATCAGAAGATT CTGAAAAGGAGGATGCTGCAGAGATACCAGGTGAGAAGCTTGATATCGGTAACTTCAGGGAAGAAAGTGTGGGCAGACTAAAAGAGAATCTAAAGATTGG TGATTCAGAGGAAGAGAACGTGGAAAAAGGTTTTCTTCAAACGAAGAATGCTCTAAATGGGAGTGAAGCAAAAACAGGCGAAATTGAAGATCTTGTGCCA GCAACACGAGTTTTGAAGAAAAAGAAGTTGAAGATCAATGTCCATAGACCGGTAGGGACAAGGGTTGTCTTTGATGAAGAAGGCAATACACTTCCTCCAC TTGCAAGAGTGGCTGATAGAAAGAATGTTGCTAATTCATCTCTGCTTGACCAAGACAAAAGAGAAGAATACTATAAAAACATGAGGGAACAAATGAAGCA TGTGGACAAGGAAGATAAAGTTTTAGATCGCCAGCGCCGCCGAGAGAAACGGATTAAGGAAAAGATGAAGAGGAAAATAGGATCTATGGGTTTAGAGGAG GATGGAGAAGGCGAGGATGATCTCTCTGGTTCAGAAGGAGAGGGCAGAAAGCATAAAAGATCAAAGATATATTTTGATAGTGATAGTGATAATGCCGAGA TGACAGAAAGTAAAGATAATGCAGGCATAAGTACCGATTCCATTTCACTTGCAGACCAAGAAGCTCTTGCCCTGAAGTTGTTGAGTTCTATGCACTCATA G
AA sequence Show only first row Show all	>Potri.001G423300.1 pacid=42793740 polypeptide=Potri.001G423300.1.p locus=Potri.001G423300 ID=Potri.001G423300.1.v4.1 annot-version=v4.1 MRKSKPKSKQTRRDRHEAEQEEISKLNQWIDSQKPDSGTNPLSLPPLPKDAPIGPLQDDKFSRYSGATMFKELPLSKRTQDGLKRANFSKMTDIQRASLP HSLCGRDILGAAKTGSGKTLAFIIPILEKLYKERWGSEDGVGGIIISPTRELAGQLFDVLKTVGKFHNFSAGLLIGGRKEVEMEKEHVNALNILVCTPGR LLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVAQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYISVHEDAETATPSRLQQTAMIVPLEQK LDMLWSFVKAHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQEKRMGIYSQFCESHSVLFSTDVASRGLDFNKAVDWVVQVDCPDDVASYI HRVGRTARYLAGGRSVLFLMPSEMKMLEKLQTAKIPVQFIKANTKRLQPVSGLLSALLVKYPDMQQLAQRAFITYLRSIHIQKDKEVFDVLKLSIEEFSA SLGLPMTPKVRFLNQKIKGKKAFGKSALLESEDSEKEDAAEIPGEKLDIGNFREESVGRLKENLKIGDSEEENVEKGFLQTKNALNGSEAKTGEIEDLVP ATRVLKKKKLKINVHRPVGTRVVFDEEGNTLPPLARVADRKNVANSSLLDQDKREEYYKNMREQMKHVDKEDKVLDRQRRREKRIKEKMKRKIGSMGLEE DGEGEDDLSGSEGEGRKHKRSKIYFDSDSDNAEMTESKDNAGISTDSISLADQEALALKLLSSMHS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	0	1
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	1.00	0.9315
AT5G57120			unknown protein		Potri.006G073100 [exp]	2.44	0.9167
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	2.82	0.8883
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	4.24	0.8946
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005000 [exp]	4.89	0.8437	GTC901
AT3G13990			Kinase-related protein of unkn...		Potri.003G063300 [exp]	4.89	0.8768
AT3G58660			Ribosomal protein L1p/L10e fam...		Potri.015G147700 [exp]	5.74	0.8679
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	8.36	0.8859
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	8.77	0.8766
AT4G28450			nucleotide binding;protein bin...		Potri.017G014700 [exp]	9.38	0.8249

Compare expression of checked genes

Potri.001G423300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.