Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27000 474 / 2e-166 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 448 / 8e-157 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 416 / 9e-144 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 342 / 2e-114 ATRBP47B RNA-binding protein 47B (.1) AT1G47500 342 / 2e-114 ATRBP47C' RNA-binding protein 47C' (.1) AT5G19350 341 / 3e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G49600 337 / 3e-112 ATRBP47A RNA-binding protein 47A (.1) AT1G47490 335 / 1e-111 ATRBP47C RNA-binding protein 47C (.1.2) AT1G54080 124 / 2e-31 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 124 / 3e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138400 [exp] 580 / 0 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 436 / 8e-152 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 373 / 2e-126 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.009G105300 [exp] 370 / 2e-125 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 368 / 1e-124 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 364 / 3e-123 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G128100 [exp] 362 / 3e-122 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.003G069000 [exp] 132 / 4e-34 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 129 / 4e-33 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018345 [exp] 422 / 2e-146 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 390 / 5e-133 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012070 [exp] 369 / 3e-125 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10031844 [exp] 359 / 2e-121 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 358 / 4e-121 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021754 [exp] 359 / 6e-121 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012071 [exp] 350 / 5e-119 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 345 / 7e-117 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 335 / 4e-113 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10002063 [exp] 330 / 2e-110 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G423400.1 pacid=42789987 polypeptide=Potri.001G423400.1.p locus=Potri.001G423400 ID=Potri.001G423400.1.v4.1 annot-version=v4.1 ATGATGCAACAACCAGGAATCGCCGGAGCGGGTGTCCCGCAACCAGATCAACAACAACAATACCAACAGCAATGGATGATGCAGCAACAGCAACAATCGC AACCCGTACCTCCTCCTGCTGGATGGACTCCGCCGCCTGTTCCTCCTCCGTCCCAGTATGGTTCAGCCGCCGGAAGTGCTGCTGTTGGAGACGAGATCAA GTCGTTGTGGATCGGGGATTTGCAGCAGTGGATGGATGAGAATTATATTCTCAGCATCTTTTCTACCACTGGGGAGGTTGTCCAAGCAAAGGTTATTCGT AATAAGCAAACAGGTTACCCAGAGGGTTATGGTTTTATTGAATTTGTTAGTCATGCTGCAGCAGAGAGGATTTTGCAAACATACAATGGGACACCAATGC CAAACAGTGAGCAGACTTTCCGGCTGAACTGGGCTACCCTCGGTGCCGGCGAGAGGCGCCAAGATGATGGGCCTGATTATACAGTTTTCATTGGAGATTT GGCTGCTGATGTCAATGATTACCTCCTACAAGAAACATTTAGAAATGTTTACTCATCCGTGAAAGGTGCAAAAGTTGTTACTGATAGAGTTACTGGACGT TCAAAGGGATATGGATTTGTTAGATTTGCTGATGAAAATGAACAAATGCGTGCCATGGTTGAGATGAACGGACAATACTGCTCTACTAGGCCTATGCGGA TTGGACCAGCGGCCACAAAGAAACCTTTGACCCAGCAATATCAGAAAGCTGCTTACCAGAGTCCTCAAGGAAATCAGGGGGAGAGTGATCCAAATAACAC AACAATATTTGTTGGTGCTTTGGATCCAAGTGTGACTGATGACACTTTGAGAGCAGTGTTTAGTAAATATGGTGAGCTAGTGCATGTGAAAATACCTGCA GGCAAGCGTTGTGGATTCGTTCAGTTTGCTAATCGCACTTGTGCGGAGCAAGCACTATCGATGCTGAACGGAACTCAGATAGCTGGTCAAAATATTCGAC TCTCATGGGGCCGTAGTCCTTCTAACAAACAGGCTCAGCCAGACCAAAGCCAGTGGAACGGTGGTGGATATTATGGATATCCACAAGGATATGATGCATA TGGATATGCTGCTGCTGCTGCTGCCGCCGCCGCTGCCGCTCCCCAAGACCCTAGCATGTATTATGGAGGATATCCTGGATATGGAAACTACCAGCAACCA GGAGCTTACCAACAGCAACCGGGAGCTTACCAACAGCAACCCGGAGCATACCAACAGCAACCCGGAGCTTACCAACAGCAACAGCAGTGA
AA sequence Show only first row Show all	>Potri.001G423400.1 pacid=42789987 polypeptide=Potri.001G423400.1.p locus=Potri.001G423400 ID=Potri.001G423400.1.v4.1 annot-version=v4.1 MMQQPGIAGAGVPQPDQQQQYQQQWMMQQQQQSQPVPPPAGWTPPPVPPPSQYGSAAGSAAVGDEIKSLWIGDLQQWMDENYILSIFSTTGEVVQAKVIR NKQTGYPEGYGFIEFVSHAAAERILQTYNGTPMPNSEQTFRLNWATLGAGERRQDDGPDYTVFIGDLAADVNDYLLQETFRNVYSSVKGAKVVTDRVTGR SKGYGFVRFADENEQMRAMVEMNGQYCSTRPMRIGPAATKKPLTQQYQKAAYQSPQGNQGESDPNNTTIFVGALDPSVTDDTLRAVFSKYGELVHVKIPA GKRCGFVQFANRTCAEQALSMLNGTQIAGQNIRLSWGRSPSNKQAQPDQSQWNGGGYYGYPQGYDAYGYAAAAAAAAAAAPQDPSMYYGGYPGYGNYQQP GAYQQQPGAYQQQPGAYQQQPGAYQQQQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	0	1
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.001G072000 [exp]	1.73	0.7546	ERF1.6
AT1G11390			Protein kinase superfamily pro...		Potri.004G032800 [exp]	3.46	0.7377
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	4.69	0.7496
AT1G71080			RNA polymerase II transcriptio...		Potri.010G114900 [exp]	8.12	0.6597
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	9.16	0.7065	ATFYPP3.2
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	9.53	0.6798
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.008G095300 [exp]	10.19	0.7321
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	12.96	0.7064
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	15.32	0.6271
AT3G57890			Tubulin binding cofactor C dom...		Potri.006G059100 [exp]	18.33	0.6530

Compare expression of checked genes

Potri.001G423400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.