Plant FIBer expression Database

Potri.001G423500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65980 285 / 4e-100 TPX1 thioredoxin-dependent peroxidase 1 (.1.2)
AT1G65970 276 / 8e-97 TPX2 thioredoxin-dependent peroxidase 2 (.1)
AT1G60740 273 / 1e-95 Thioredoxin superfamily protein (.1)
AT1G65990 201 / 1e-62 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1)
AT3G52960 188 / 7e-61 Thioredoxin superfamily protein (.1)
AT3G06050 109 / 2e-30 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G083500
[exp]
319 / 8e-114 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2)
Potri.013G102100
[exp]
187 / 1e-60 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1)
Potri.019G024000
[exp]
102 / 2e-27 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023180
[exp]
283 / 2e-99 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2)
Lus10015077
[exp]
283 / 2e-99 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2)
Lus10023662
[exp]
277 / 5e-97 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2)
Lus10003373
[exp]
188 / 7e-61 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1)
Lus10002843
[exp]
186 / 3e-60 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1)
Lus10021932
[exp]
108 / 2e-29 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1)
Lus10041218
[exp]
96 / 8e-24 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF00578 AhpC-TSA AhpC/TSA family
Representative CDS sequence
>Potri.001G423500.1 pacid=42789563 polypeptide=Potri.001G423500.1.p locus=Potri.001G423500 ID=Potri.001G423500.1.v4.1 annot-version=v4.1
ATGGCTCCGATTGCTGTCGGTGATGTCTTGCCTGATGGAAAGCTCGCTTATTTCGACGAACAAGATCAGCTCCAGGACGTGTCTGTACACTCTCTTGCTG
CCGGTAAAAAGGTCATCCTCTTTGGTGTTCCCGGTGCCTTCACCCCCACTTGCAGCTTGAAGCATGTGCCAGGGTTTGTTGAGAAAGCAGAGGAGCTTAA
ATCCAAGGGGGTTGCTGAAATTTTGTGCATCAGCGTGAATGACCCCTTTGTGATGAAAGCATGGGCAAAAACTTACCCTGAGAATAAGCATGTCAAATTC
CTAGCTGATGGATCTGCAACATACACCCATGCTCTTGGCCTTGAGCTTGACCTGCAAGAGAAGGGACTTGGCACCCGTTCTAGGAGGTTTGCTCTCTTGG
TCGATGACCTCAAGGTGAAAGCTGCAAATATTGAAGGTGGTGGAGAATTCACTGTGTCCAGTGCTGATGATATCCTCAAGGATCTTTAA
AA sequence
>Potri.001G423500.1 pacid=42789563 polypeptide=Potri.001G423500.1.p locus=Potri.001G423500 ID=Potri.001G423500.1.v4.1 annot-version=v4.1
MAPIAVGDVLPDGKLAYFDEQDQLQDVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFVEKAEELKSKGVAEILCISVNDPFVMKAWAKTYPENKHVKF
LADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSADDILKDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G65980 TPX1 thioredoxin-dependent peroxida... Potri.001G423500
[exp]
0 1
AT5G16550 unknown protein Potri.004G082300
[exp]
4.24 0.7332
AT4G10270 Wound-responsive family protei... Potri.013G148100
[exp]
6.32 0.7003
AT5G51550 EXL3 EXORDIUM like 3 (.1) Potri.015G129700
[exp]
12.12 0.7714
AT2G23260 UGT84B1 UDP-glucosyl transferase 84B1 ... Potri.009G095200
[exp]
13.26 0.7155
AT3G14890 phosphoesterase (.1.2) Potri.001G390500
[exp]
16.37 0.6237
AT5G45470 Protein of unknown function (D... Potri.014G030400
[exp]
24.97 0.7092
AT2G20480 unknown protein Potri.001G009501
[exp]
28.14 0.6944
Potri.013G094050
[exp]
32.64 0.6904
AT5G63500 Protein of unknown function (D... Potri.012G100100
[exp]
37.33 0.7031
AT1G02780 EMB2386 embryo defective 2386, Ribosom... Potri.004G078000
[exp]
37.94 0.7017 Pt-RPL19.3

Potri.001G423500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.