Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20500 701 / 0 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 518 / 0 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 487 / 3e-171 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 477 / 2e-167 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT5G34850 300 / 1e-97 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G36350 288 / 5e-93 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G56360 282 / 1e-90 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT3G07130 283 / 3e-90 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G16430 277 / 8e-89 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 271 / 2e-86 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138200 [exp] 785 / 0 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 497 / 4e-175 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 301 / 5e-98 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.004G160100 [exp] 300 / 3e-97 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G123700 [exp] 293 / 1e-94 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.003G176000 [exp] 296 / 2e-94 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.005G233400 [exp] 292 / 2e-94 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G243900 [exp] 294 / 4e-94 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.009G121200 [exp] 290 / 2e-93 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040079 [exp] 688 / 0 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 682 / 0 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021377 [exp] 491 / 1e-172 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10017056 [exp] 488 / 1e-171 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021378 [exp] 486 / 4e-165 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10021376 [exp] 467 / 2e-164 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017059 [exp] 431 / 2e-149 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10017057 [exp] 318 / 1e-106 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10027710 [exp] 312 / 4e-102 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 312 / 9e-102 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G423700.1 pacid=42792307 polypeptide=Potri.001G423700.1.p locus=Potri.001G423700 ID=Potri.001G423700.1.v4.1 annot-version=v4.1 ATGGAGCCAAAACTGGTTTTATTTGTGTTTCTGCTAATCTCTGCAGCGGCTACCTGTGAATACATTAGACCTCCACCTCGAAAGACCCTTCATTTTCCTT GGAATTCAAAGTTGTCTTCTCATCCCCAACAGGTGCACATCTCTTTGGCTGGAGACAAGCACATGCGAGTCTCATGGGTCTCCAATGATAAATCTACCCT ACCCATGGTTGAATATGGAACTTCTCCTGGAAGATACAGCAATAAGTCTCAAGGAGAGAGCACTTCATATAGTTATCTATTTTATAGCTCTGGAAAGATA CACCACACAATCATTGGGCCGCTGGAAGATAACACGGTTTATTACTATCGATGTGGTGGAGGAGGTCCTGAGTACAAGCTCAAGACTCCTCCAGCTCAGT TCCCTGTTATGTTTGCTGTGGCAGGAGATTTAGGCCAAACTGGATGGACTAAATCGACACTAGATCATATTGACCTATGCAAATATGATGTGCATCTGCT TCCTGGAGACCTTTCATATGCTGATTACATACAGCACCGCTGGGACACATTTGGCGAGCTGGTTGAGCCACTTGCCAGTGCAAGACCATGGATGGTAACA CAGGGGAATCATGAAAAGGAAAGCATTATGTTCTTTAAGGATGGTTTTCAATCCTACAATTCTAGATGGAAGATGCCATATGAGGAGAGTGGATCAAGTT CAAATCTTTATTATTCTTTTGAAGTTGCAGGGGCTCACATTATTATGCTTGGCTCATATACAGATTACGATGAGCACTCGGATCAATATAACTGGCTCAA GGCTGATGTTGCAAAGGTGGATCGAAAGAAGACACCTTGGCTGATCGTACTATTCCATGTCCCATGGTATAATAGCAACGAGGCTCATCAAGATGAAGGG GACAGAATGCTGGCAGCTATGGAGCCATTACTTCACGCTGCTAGTGTGGATATTGTGCTAGCTGGCCATGTGCATGCTTATGAACGCACGGAACGTGTGA ACAAAGGAAAATTGGATCCATGTGGTGCTGTCCATATTACGATCGGAGATGGAGGAAACAGAGAAGGTTTAGCGAGCAAATACAAAAACCCACAGCCAGC TTGGTCAGTCTTCCGTGAAGCAAGTTTTGGCCATGGCGAGCTCAAATTAGCGAATTCAACTCATGCCTACTGGAGTTGGCACAGGAACGATGACGATGAG TCTGTTAGATCAGATCAGGTCTGGATAACTTCATTGGAGAATTCTGGATGCATCGCTGAAAAGAAACATGAACTGATGAAGATTCTCTCGGGACCTTAA
AA sequence Show only first row Show all	>Potri.001G423700.1 pacid=42792307 polypeptide=Potri.001G423700.1.p locus=Potri.001G423700 ID=Potri.001G423700.1.v4.1 annot-version=v4.1 MEPKLVLFVFLLISAAATCEYIRPPPRKTLHFPWNSKLSSHPQQVHISLAGDKHMRVSWVSNDKSTLPMVEYGTSPGRYSNKSQGESTSYSYLFYSSGKI HHTIIGPLEDNTVYYYRCGGGGPEYKLKTPPAQFPVMFAVAGDLGQTGWTKSTLDHIDLCKYDVHLLPGDLSYADYIQHRWDTFGELVEPLASARPWMVT QGNHEKESIMFFKDGFQSYNSRWKMPYEESGSSSNLYYSFEVAGAHIIMLGSYTDYDEHSDQYNWLKADVAKVDRKKTPWLIVLFHVPWYNSNEAHQDEG DRMLAAMEPLLHAASVDIVLAGHVHAYERTERVNKGKLDPCGAVHITIGDGGNREGLASKYKNPQPAWSVFREASFGHGELKLANSTHAYWSWHRNDDDE SVRSDQVWITSLENSGCIAEKKHELMKILSGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.001G423700 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.001G301800 [exp]	15.77	0.8325
AT3G03550			RING/U-box superfamily protein...		Potri.019G043900 [exp]	22.80	0.8125
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	27.16	0.7899
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	37.41	0.8080
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	50.37	0.8131
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.014G115300 [exp]	53.47	0.7772
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	58.24	0.8088
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	58.58	0.8116
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.013G111400 [exp]	66.10	0.8041
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	70.41	0.7767

Compare expression of checked genes

Potri.001G423700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.