Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54890 514 / 0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 322 / 6e-108 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT2G20020 274 / 5e-86 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 264 / 1e-83 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 64 / 9e-11 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G23070 58 / 5e-09 ATCFM3A CRM family member 3A (.1) AT3G18390 56 / 3e-08 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 51 / 8e-07 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 48 / 7e-06 ATCFM3B CRM family member 3B (.1) AT3G27550 42 / 0.0005 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074400 [exp] 343 / 2e-116 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.006G163100 [exp] 270 / 2e-84 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 260 / 3e-82 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 64 / 7e-11 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 62 / 3e-10 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 57 / 1e-08 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 45 / 6e-05 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.001G343700 [exp] 43 / 0.0003 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G148901 [exp] 42 / 0.0004 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040080 [exp] 523 / 0 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10019623 [exp] 338 / 6e-117 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 313 / 2e-104 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10036545 [exp] 295 / 4e-98 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10012974 [exp] 282 / 1e-89 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 263 / 1e-82 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 261 / 2e-82 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 261 / 7e-82 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 253 / 1e-77 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 162 / 4e-46 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.001G423800.1 pacid=42789710 polypeptide=Potri.001G423800.1.p locus=Potri.001G423800 ID=Potri.001G423800.1.v4.1 annot-version=v4.1 ATGGCAGTAAAGTTCCTTTCTTTCCTTCACAAAACCCTAACCCAAAACCCTAAATCAAAATCCCTCTACGTTTCTTACTTCCTAAACCACACTCTCTCTC AAGACCAATATGACCCGCCATTTTCTCTCACCAAAAAACCCAAACCCAAAAACACCACCGAGCCGAAAGAAACGCCTGACCCGAATAACGACCCGAAACT CCCTGTAAAATCGGACCTTGCTTTTGACTTCAGATACTCATATTCTGAGTCAAATCCTGCAATTGAGCCAATTGGGTATCGTGAACCGAAACGCTTTTCT CCATTTGGACCCGGTCGCCTTGATAGGAAATGGACTGGCACTGCTGCTCCGACCCAGTTGGAGACGGACATGGATAAGTTAATGGAGGAGAGGAATCGGG TTCTTGGGGACCCACTTACGGAGGAGGAGGTGGCGGAGCTAGTGGAGCGGTATCGCCATAGTGATTGCTCCAGGCAAATCAATTTGGGCAAGGGAGGGGT TACTCACAATATGTTGGATGATATTCACAACCATTGGAAGAGAGCTGAAGCTGTGAGGATCAAGTGTTTGGGAGTACCAACTCTTGATATGGACAATGTT TGTTTCCATCTTGAGGATAAATCTGGTGGGAAGGTTGTCTATAGGAACATTAATATCCTTCTTTTGTATCGGGGTCGAAATTATGATCCTGAGAACCGGC CTGTTATTCCCCTCATGTTGTGGAAGCCTTATGCGCCTATATATCCGAAGCTTGTTAAGAATGTAGCTGATGGTTTGACGTTTGAAGAGACGAAAGAAAT GAGAAACAGAGGATTGAATTCTCTGCCCCTGATGAAACTCACCAGGAATGGTGTGTATGTGAATGTGGTTGACAGAGTGAGGGATGCTTTTGAAACTGAG GAGGTTGTGAGACTGGACTGCAAACATGTGGGTATGAGTGACTGCAAAAAGATTGGTGTGAAACTAAAGGATTTGGTACCTTGTGTTCCTATTTTATTCA AGGACGAGCAGATTATTCTTTGGAGGGGCAAGAGAAATCAGGAGCTGGAATCATCAACTGCCTGA
AA sequence Show only first row Show all	>Potri.001G423800.1 pacid=42789710 polypeptide=Potri.001G423800.1.p locus=Potri.001G423800 ID=Potri.001G423800.1.v4.1 annot-version=v4.1 MAVKFLSFLHKTLTQNPKSKSLYVSYFLNHTLSQDQYDPPFSLTKKPKPKNTTEPKETPDPNNDPKLPVKSDLAFDFRYSYSESNPAIEPIGYREPKRFS PFGPGRLDRKWTGTAAPTQLETDMDKLMEERNRVLGDPLTEEEVAELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNV CFHLEDKSGGKVVYRNINILLLYRGRNYDPENRPVIPLMLWKPYAPIYPKLVKNVADGLTFEETKEMRNRGLNSLPLMKLTRNGVYVNVVDRVRDAFETE EVVRLDCKHVGMSDCKKIGVKLKDLVPCVPILFKDEQIILWRGKRNQELESSTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Potri.001G423800 [exp]	0	1
AT5G27710			unknown protein		Potri.013G017100 [exp]	2.00	0.8345
AT5G60190			Cysteine proteinases superfami...		Potri.013G002700 [exp]	21.90	0.7653
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	27.00	0.7978
AT4G21720			unknown protein		Potri.004G041700 [exp]	32.86	0.7719
AT1G15170			MATE efflux family protein (.1...		Potri.010G117000 [exp]	35.39	0.7745
					Potri.008G130733 [exp]	39.69	0.7741
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074300 [exp]	43.68	0.7472
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Potri.003G102700 [exp]	49.50	0.7411
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	63.48	0.7327
AT2G16070		PDV2	plastid division2 (.1.2)		Potri.004G149900 [exp]	95.74	0.7387

Compare expression of checked genes

Potri.001G423800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.