Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54880 274 / 3e-89 DTW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051600 [exp] 41 / 0.001 AT2G41750 204 / 1e-65 DTW domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000447 [exp] 276 / 1e-90 AT5G54880 178 / 1e-52 DTW domain-containing protein (.1) Lus10012192 [exp] 50 / 9e-07 AT2G41750 200 / 2e-64 DTW domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03942 [poplar] [flax] DTW DTW domain
Representative CDS sequence Show only first row Show all	>Potri.001G423900.1 pacid=42788095 polypeptide=Potri.001G423900.1.p locus=Potri.001G423900 ID=Potri.001G423900.1.v4.1 annot-version=v4.1 ATGCTTGTTTGTTTTGGTAGCCGGATTCAAACCCCAACCCGAACCAGCTCGTTATATTCAATCCTCAAATCTCTCCCCTCCGAAACCCCAAACGCTTCAA AAACCCTAATGGCAGCGCCAGGAACCCAATTGAAATCCAAGCGACCCACTTGTCCATCTTGCTCCAAACCCGCAAGTCTCTGTATCTGCATTCGGATCCA GAACCCGGGTCTTCAAAACAAGGTAAACATCACCATTCTCCAACACAGTCTAGAGAGAAAACACGCTCTTAATTCTGCAAGAATCGCAAGAGTAGGGCTT CAAAATGTCACTTTGAGCACTGTTTCTGATGTTAAATTTGATGCCAAGTTCATGATCCATTTGTTTGACCCGGGTCATGATTCGGGTTCGGGTCAAGATG GAGAAAAAAGTTCAGATTTTTATCAAGTTATGGATGATAAAGCTGATGAATTCGATGCCAGTCATGTAACTAAAGGTAGTAAAGAGCCAGTGATTACCTG TAGTGTAGGTAAATATGGAATTGTTACTAATATTAGTATTGGTAATGTATGGATGCCTCATGTTCAGTGGAAAAGAAGGCTAAGTTTTGATAAGATTTTG GCCTCAAAGGTGGCTGTTGATGATTTGGCAAAAGGGTTTGTTGTTAAAAAGTTGCAAAGGAGAAGGGTTGATGGGAGTGAAGAATTGGAAGAGGTAGAAG AGTTTGAAGTTGCGGTGCCTCCAGGGTCAGTGCTTTTATTTCCTAGCAAGAACGCATTGGATGTTGATGGCCTTAAAGCAATGGATTTTGAAGCGAAGAA TTTGATTGTTTTAGATGGGACATGGTCAAAGGCAAGGAGAATGTATTGTGAGAATCCGTGGTTGAGGTTCTTGCCGCATTTGAAGTTGGACTTGGATAGG TTGAGTTTGTATAGTGAGGTTAGGCAACAACCAAAAGCTGGTTATTTGTCTACTATTGAGAGCATTGTTTATGCGTTGGAGGAAATAGGGGATTATCCTG AAGGCTTGGATAATCTATTGGGTGTTTTTGAGTCGATGGTTGGTGATCAAAGAAGATTTAAAAATGAGAGGCTGAGCAAGCTCTCTTCTGCGTAA
AA sequence Show only first row Show all	>Potri.001G423900.1 pacid=42788095 polypeptide=Potri.001G423900.1.p locus=Potri.001G423900 ID=Potri.001G423900.1.v4.1 annot-version=v4.1 MLVCFGSRIQTPTRTSSLYSILKSLPSETPNASKTLMAAPGTQLKSKRPTCPSCSKPASLCICIRIQNPGLQNKVNITILQHSLERKHALNSARIARVGL QNVTLSTVSDVKFDAKFMIHLFDPGHDSGSGQDGEKSSDFYQVMDDKADEFDASHVTKGSKEPVITCSVGKYGIVTNISIGNVWMPHVQWKRRLSFDKIL ASKVAVDDLAKGFVVKKLQRRRVDGSEELEEVEEFEVAVPPGSVLLFPSKNALDVDGLKAMDFEAKNLIVLDGTWSKARRMYCENPWLRFLPHLKLDLDR LSLYSEVRQQPKAGYLSTIESIVYALEEIGDYPEGLDNLLGVFESMVGDQRRFKNERLSKLSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	0	1
AT2G39725			LYR family of Fe/S cluster bio...		Potri.001G018100 [exp]	2.44	0.7856
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	2.64	0.7940
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	4.58	0.7166
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	7.54	0.7477
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	8.94	0.6880
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	8.94	0.7164
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.005G204100 [exp]	9.16	0.6982
AT3G25545			unknown protein		Potri.010G134600 [exp]	10.00	0.7417
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.015G031400 [exp]	13.41	0.6984
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.002G070200 [exp]	13.85	0.6960	RBP1.2

Compare expression of checked genes

Potri.001G423900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.