Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50740 159 / 1e-51 Transmembrane proteins 14C (.1) AT3G20510 154 / 1e-49 Transmembrane proteins 14C (.1) AT3G57280 58 / 4e-11 Transmembrane proteins 14C (.1) AT2G26240 45 / 6e-07 Transmembrane proteins 14C (.1) AT3G43520 42 / 3e-05 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138100 [exp] 168 / 2e-55 AT1G50740 128 / 1e-39 Transmembrane proteins 14C (.1) Potri.003G094300 [exp] 57 / 8e-11 AT3G57280 214 / 3e-70 Transmembrane proteins 14C (.1) Potri.001G139800 [exp] 55 / 4e-10 AT3G57280 172 / 5e-54 Transmembrane proteins 14C (.1) Potri.006G217400 [exp] 39 / 0.0003 AT3G43520 161 / 7e-49 Transmembrane proteins 14C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019624 [exp] 171 / 2e-56 AT1G50740 177 / 8e-59 Transmembrane proteins 14C (.1) Lus10008541 [exp] 159 / 2e-51 AT1G50740 178 / 3e-59 Transmembrane proteins 14C (.1) Lus10035434 [exp] 45 / 2e-06 AT2G43080 365 / 4e-125 P4H isoform 1 (.1) Lus10011926 [exp] 38 / 0.0008 AT3G43520 166 / 7e-51 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [poplar] [flax] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Potri.001G424000.1 pacid=42789823 polypeptide=Potri.001G424000.1.p locus=Potri.001G424000 ID=Potri.001G424000.1.v4.1 annot-version=v4.1 ATGCATGATTTCTGCTTCACAATCCCTTATGGTTTGGTTCTTGTGATTGGAGGGGTTATTGGGTATTTGAAGAAAGGGAGTATGGCATCATTAGGAGGTG GTGCTGGCACTGGATTGGTTCTTATCTTTGCTGGATACTTGAGTCTTAAAGCTTTTGAGAAGAGGAAGAATTCATTTCTTGGCTTGGCTATCGAAACTGT TTGTGCAGCCATACTGACATTTGTGATGGGGCAACGCTATATGCAAACCTCTAAGATAATGCCTGCTGGTATTGTTGCTGGTATCAGTGCTCTTATGACT CTGTTTTACCTGTACAAAATCGCGGCTGGTGGCAACCACATTCCAGCTAAGGCTGAGTGA
AA sequence Show only first row Show all	>Potri.001G424000.1 pacid=42789823 polypeptide=Potri.001G424000.1.p locus=Potri.001G424000 ID=Potri.001G424000.1.v4.1 annot-version=v4.1 MHDFCFTIPYGLVLVIGGVIGYLKKGSMASLGGGAGTGLVLIFAGYLSLKAFEKRKNSFLGLAIETVCAAILTFVMGQRYMQTSKIMPAGIVAGISALMT LFYLYKIAAGGNHIPAKAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50740			Transmembrane proteins 14C (.1...		Potri.001G424000 [exp]	0	1
AT1G50740			Transmembrane proteins 14C (.1...		Potri.011G138100 [exp]	1.41	0.6298
AT5G47510			Sec14p-like phosphatidylinosit...		Potri.003G076200 [exp]	5.83	0.6066
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.003G125800 [exp]	15.68	0.5241	ATGSTT1.2
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.014G158300 [exp]	17.20	0.5682	SMT3.2
AT4G11240		TOPP7	Calcineurin-like metallo-phosp...		Potri.001G098600 [exp]	26.55	0.5592	PP1.4
AT1G72930		TIR	toll/interleukin-1 receptor-li...		Potri.005G004366 [exp]	47.24	0.5160
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G252200 [exp]	47.62	0.4994
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	50.00	0.5148
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	61.48	0.4959
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	77.14	0.4863

Compare expression of checked genes

Potri.001G424000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.