Plant FIBer expression Database

Potri.001G424500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27020 879 / 0 unknown protein
AT5G54870 865 / 0 unknown protein
AT1G70160 724 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G137700
[exp]
999 / 0 AT4G27020 894 / 0.0 unknown protein
Potri.010G036900
[exp]
736 / 0 AT1G70160 852 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040054
[exp]
883 / 0 AT4G27020 868 / 0.0 unknown protein
Lus10032644
[exp]
880 / 0 AT4G27020 868 / 0.0 unknown protein
Lus10043107
[exp]
862 / 0 AT4G27020 849 / 0.0 unknown protein
Lus10010721
[exp]
742 / 0 AT1G70160 880 / 0.0 unknown protein
Lus10029209
[exp]
735 / 0 AT1G70160 872 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G424500.1 pacid=42788773 polypeptide=Potri.001G424500.1.p locus=Potri.001G424500 ID=Potri.001G424500.1.v4.1 annot-version=v4.1
ATGGAGCCATCTATCTCTTTGAAAACATTACTGACAATCTCCCTCTTTCTTTTCTTTGTCACCCCACAATCATCTCTAGCTGCAAAATTACCCTTCCATC
CTCAGGATTTGCTTCCTTTGTTACCAAGACAAGTTTCATGGCCTATTCTCAATCGCCTACATGGTGCTGTAGACCTATTGCCCACATTTGTTGGTGCTGC
CTCTGCTTTAAATGAAACCGGTGACTGGAAAGGTGCTTGCTTTTACGAGAACCGGGCTTGGATGGAGTTTCATAATAAGACTGGTAGTGAATTTGGTGGT
GGAACACTTCATCTTAAGGTTAGCAATGCTCACAGCTGGACATGCATGGATATTTATGTCTTTGCCACTCCATATCGTGTGACATGGGATTATTACTTAT
TATCTCGAGAACATACATTAGAGTTTAAAGAGTGGGAAAGCAAAGCTGAATACGAATATGTGAAAAATCGGGGAGTCTCTATTTTCCTTATGCACGCGGG
GATGCTCGGAACCCTTCAAGCACTGTGGGATGTCTTTCCCTTATTTACAAATACTGGATGGGGTGAGAATTCTAATATTGGGTTCCTGGAGAAACACATG
GGAGCTACCTTTGAACAGCGTCCTCAGCCTTGGGCTACCAACATCAGTGTCGATGATATTCACTCTGGTGACTTCCTTGTTATATCAAAAATTCGTGGAA
GATGGGGTGGTTTTGAGACTTTGGAGAAGTGGGTCAGTGGAGCTTATGCTGGTCATTCTGCTGTTTTCTTACGGGATTCTGAAGGAAAACTATGGGTTGG
CGAATCAGGAAATGAAAATGAACAGGGAGAAGATGTTATTGCTGTGTTACCCTGGGATGAATGGTGGGAATTTGAGCTGAACAAGGACAACTCAAATCCA
CATATTGCACTGCTTCCTCTGCATCCTGATGTGCGAGCTAAGTTCAATGAGACTGCTGCGTGGGAGTATGCTTTGAGCATGAAAGGAAACCCTTATGGAT
ATCATAACTTGATATTCAGCTGGATAGACACTCTGGATGGGAACTATCCACCACCATTGGATGCTCATCTGGTTGCTTCTTTTATGACAGTTTGGAATCA
CATACAACCTGAATATGCTGCCAACATGTGGAACGAAGCCTTGAACAAACGACTTGGAACTCAGGGCCTTGATCTTCCTGATATCTTGGTAGAAGTTGAA
AAGCGTGGGTCATCCTTTGGAAAATTGTTGACAATTCCTGAACAGGATGATTGGTTGTATACTGATGGAAAGTCGACCTCATGTATTGCTTTTGTCCTGG
AAATGTACAAGGAAGCAGGACTATTTGATCCAATTACTAGCTCTGTACAAGTGACTGAATTTACGATCAAAGATGCTTACACACTAAGGTTTTTTGAAAA
CAATTCAAGCCGCCTGCCAAAGTGGTGTAATGATGGAGATGATGTGAAGCTCCCATTTTGTCAGATTAAAGGGCAGTATCGAATGGAACTACCAGAATAC
AATACCATGGATCCTTACCCCCATATGAATGAAAGGTGCCCATCGCTTCCCCCAAAATACTTTAGAACACAGAATTGCTAA
AA sequence
>Potri.001G424500.1 pacid=42788773 polypeptide=Potri.001G424500.1.p locus=Potri.001G424500 ID=Potri.001G424500.1.v4.1 annot-version=v4.1
MEPSISLKTLLTISLFLFFVTPQSSLAAKLPFHPQDLLPLLPRQVSWPILNRLHGAVDLLPTFVGAASALNETGDWKGACFYENRAWMEFHNKTGSEFGG
GTLHLKVSNAHSWTCMDIYVFATPYRVTWDYYLLSREHTLEFKEWESKAEYEYVKNRGVSIFLMHAGMLGTLQALWDVFPLFTNTGWGENSNIGFLEKHM
GATFEQRPQPWATNISVDDIHSGDFLVISKIRGRWGGFETLEKWVSGAYAGHSAVFLRDSEGKLWVGESGNENEQGEDVIAVLPWDEWWEFELNKDNSNP
HIALLPLHPDVRAKFNETAAWEYALSMKGNPYGYHNLIFSWIDTLDGNYPPPLDAHLVASFMTVWNHIQPEYAANMWNEALNKRLGTQGLDLPDILVEVE
KRGSSFGKLLTIPEQDDWLYTDGKSTSCIAFVLEMYKEAGLFDPITSSVQVTEFTIKDAYTLRFFENNSSRLPKWCNDGDDVKLPFCQIKGQYRMELPEY
NTMDPYPHMNERCPSLPPKYFRTQNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27020 unknown protein Potri.001G424500
[exp]
0 1
AT3G25950 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.008G178800
[exp]
2.00 0.9360
AT1G46768 AP2_ERF RAP2.1 related to AP2 1 (.1) Potri.014G025200
[exp]
2.00 0.9192 DREB36,DREB1.2
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Potri.008G003300
[exp]
3.31 0.9080 GCN4.3
AT3G54300 ATVAMP727 vesicle-associated membrane pr... Potri.010G239900
[exp]
4.00 0.9339 Pt-VAMP727.2
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G014401
[exp]
5.29 0.8904
AT5G64230 unknown protein Potri.017G053200
[exp]
5.47 0.9187
AT2G03530 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PE... Potri.008G095600
[exp]
8.12 0.9301
AT5G38710 Methylenetetrahydrofolate redu... Potri.004G106400
[exp]
9.00 0.9107
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.013G025000
[exp]
9.16 0.9079 Pt-HAP5.3
AT5G45130 ATRAB-F2A, RHA1... ARABIDOPSIS RAB HOMOLOG F2A, R... Potri.018G079300
[exp]
9.16 0.9136

Potri.001G424500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.