Plant FIBer expression Database

Potri.001G424600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27040 436 / 4e-157 VPS22 EAP30/Vps36 family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002292
[exp]
451 / 8e-163 AT4G27040 442 / 2e-159 EAP30/Vps36 family protein (.1.2.3.4)
Lus10004047
[exp]
391 / 9e-140 AT4G27040 380 / 1e-135 EAP30/Vps36 family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF04157 EAP30 EAP30/Vps36 family
Representative CDS sequence
>Potri.001G424600.1 pacid=42791770 polypeptide=Potri.001G424600.1.p locus=Potri.001G424600 ID=Potri.001G424600.1.v4.1 annot-version=v4.1
ATGAGGAGGAGACCTGGTATTGGTGGGTTACAAACAGCAGCTGCTGCAAGGGATCAATATCGGTTACTAGGAGAAAATGTAGCAAAGCTAAGAACTGATC
TTATGAAAGAACAGCTTGCCACTTTCCGTTCTCAGCTTGAAGATTTTGCCCGTAAACACAAGAATGATATTCGAAAGAACCCAACTTTCAGGACGCAATT
CCATGAGATGTGTGCTAAAGTTGGAGTGGATCCACTGGCATCGAATAAAGGTTTTTGGGCAGAGCTGTTAGGGATCGGTGACTTCTATTATGAACTTGGA
GTGCAAATTGTAGAGATATGCTTGGCAACAAGACCTCACAATGGAGGTTTGATCAATCTGCAAGAACTCTGTGCTCTGCTTCGGCAGAAACGAAAAAGTG
ATCGTGAAGCTGTGTCAGAGGATGACTGTTTGCGTGCTATAAGTAAGCTGAAGATATTGGGCAGTGGTTTTGAGGTGATTTCTGTTGGGAAAAGAAAGCT
TGTTCGGTCAGTTCCAACTGAATTGAACAAAGACCATAATGAAATTCTGGAGCTGGCTCAGGCTCAAGGTTTTGTGACTGTTGATGAGTTAGAGAGACGG
CTTTCTTGGACATCTGGTCGTGCTACTGATGCCCTTGATACTTTATTAGATGAAGGACTTGCTATGATTGACGATGGCCATAGAGATGGCAAACGCCGCT
ATTGGTTCCCCTGTGTATCTTCCATCTCCACTTCAGTGGTTTCTGATATTTAA
AA sequence
>Potri.001G424600.1 pacid=42791770 polypeptide=Potri.001G424600.1.p locus=Potri.001G424600 ID=Potri.001G424600.1.v4.1 annot-version=v4.1
MRRRPGIGGLQTAAAARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRTQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELG
VQIVEICLATRPHNGGLINLQELCALLRQKRKSDREAVSEDDCLRAISKLKILGSGFEVISVGKRKLVRSVPTELNKDHNEILELAQAQGFVTVDELERR
LSWTSGRATDALDTLLDEGLAMIDDGHRDGKRRYWFPCVSSISTSVVSDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27040 VPS22 EAP30/Vps36 family protein (.1... Potri.001G424600
[exp]
0 1
AT5G11900 Translation initiation factor ... Potri.006G228100
[exp]
3.16 0.7192
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.001G374000
[exp]
4.69 0.7337 RAB11.4
AT1G25520 Uncharacterized protein family... Potri.010G128400
[exp]
6.48 0.6811
AT3G02520 GENERALREGULATO... general regulatory factor 7 (.... Potri.017G113300
[exp]
8.94 0.6431 GF14.5
AT3G07170 Sterile alpha motif (SAM) doma... Potri.002G244700
[exp]
9.16 0.7096
AT5G40370 GRXC2 glutaredoxin C2, Glutaredoxin ... Potri.001G347700
[exp]
11.13 0.7039 PtrcGrx_C2
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.010G164200
[exp]
12.84 0.6848 ATS9.1
AT3G02520 GENERALREGULATO... general regulatory factor 7 (.... Potri.004G101700
[exp]
16.52 0.6627
AT4G29040 RPT2A regulatory particle AAA-ATPase... Potri.002G252600
[exp]
17.54 0.6811 Pt-RPT2.2
AT1G09920 TRAF-type zinc finger-related ... Potri.002G109800
[exp]
19.49 0.6690

Potri.001G424600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.