Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27030 387 / 2e-135 FADA, FAD4 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1) AT1G62190 340 / 1e-117 Kua-ubiquitin conjugating enzyme hybrid localisation domain (.1) AT2G22890 333 / 5e-115 Kua-ubiquitin conjugating enzyme hybrid localisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037808 [exp] 375 / 1e-131 AT4G27030 363 / 1e-126 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1) Lus10017089 [exp] 370 / 1e-129 AT4G27030 353 / 1e-122 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10520 [poplar] [flax] TMEM189_B_dmain B domain of TMEM189, localisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G424700.1 pacid=42790988 polypeptide=Potri.001G424700.1.p locus=Potri.001G424700 ID=Potri.001G424700.1.v4.1 annot-version=v4.1 ATGTCTATCCTTCCCCAGCACAACCACTGCCTCACAAGGTCTCCAGCCCATAATCCATGGCACCGCAAGCGTATCATCTGCTCAGCCACTACCACCCCTA CCAAGCCTAAGTCTAGCCCTAACCAGGTAACCTTTGAGCCACAGTTTGTAACCCCACCAAACCTAGTCACCTCTATTAGCACCCCTCCTGTGCTGAATGA CCCAAGTTTGCAGTCAACATGGTCTCACCGAACATGGGTAGCAACCGGGTGCACCACGGTGCTGGTTTCTCTAGCTAAGGCCATTGCAGGTGCAGGTCAT TCTCATATCTGGCTTGAGCCCATGTTAGCAGGCTATATTGGGTACATTTTAGCTGACCTTGGATCTGGGGTTTACCATTGGGGTATTGACAACTATGGTG ATGGATCAACACCGATTTTTGGCAATCAAATTGAAGCATTTCAAGGTCATCATAAGTGGCCATGGACAATAACTAGGCGTCAGTTTGCTAATAACTTGCA TGCTCTTGCACGAACAGTAGCATTCTTTGTGCTTCCTGTAGACTTGGTTTGTAATGATCCCACTGTAAATGCCTTTGTTGGTGTGTGCTCCGGTTGTATC ATGTTTAGCCAGCAATTTCATGCGTGGGCTCATGGCACAAAGAGCAAGTTACCCCCCATAGTAGTGGCATTGCAGGATGTTGGATTGCTTGTGTCAAGGT CACAACATGGTGCTCATCATCGGCAACCATATAACAACAATTATTGCATAGTGAGTGGAGTTTGGAATGAATTCTTGGATAAGAATAAGGTTTTTGAGGC ATTAGAGATGGCCTTGTATTTTAAGCTTGGGGTAAGACCAAGGTCCTGGAGTGAACCTACCACTGACTGGACTGAAGAGACTGAGAGCGCTTCTCAGGTT GCAGTCCAATAA
AA sequence Show only first row Show all	>Potri.001G424700.1 pacid=42790988 polypeptide=Potri.001G424700.1.p locus=Potri.001G424700 ID=Potri.001G424700.1.v4.1 annot-version=v4.1 MSILPQHNHCLTRSPAHNPWHRKRIICSATTTPTKPKSSPNQVTFEPQFVTPPNLVTSISTPPVLNDPSLQSTWSHRTWVATGCTTVLVSLAKAIAGAGH SHIWLEPMLAGYIGYILADLGSGVYHWGIDNYGDGSTPIFGNQIEAFQGHHKWPWTITRRQFANNLHALARTVAFFVLPVDLVCNDPTVNAFVGVCSGCI MFSQQFHAWAHGTKSKLPPIVVALQDVGLLVSRSQHGAHHRQPYNNNYCIVSGVWNEFLDKNKVFEALEMALYFKLGVRPRSWSEPTTDWTEETESASQV AVQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Potri.001G424700 [exp]	0	1
AT3G52740			unknown protein		Potri.004G202900 [exp]	1.00	0.9868
					Potri.015G143150 [exp]	2.00	0.9847
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.002G056800 [exp]	3.46	0.9742
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	5.19	0.9437
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.010G251800 [exp]	5.83	0.9370
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.015G022100 [exp]	6.32	0.9632
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	7.34	0.9504
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	7.93	0.9652
AT3G52740			unknown protein		Potri.004G203000 [exp]	8.06	0.9736
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	9.16	0.9693

Compare expression of checked genes

Potri.001G424700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.