Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 277 / 2e-77 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 266 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) AT5G63020 235 / 5e-64 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G26090 227 / 4e-61 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12220 218 / 2e-58 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 218 / 2e-58 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G61300 215 / 6e-58 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 215 / 3e-57 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 214 / 6e-57 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 213 / 1e-56 RFL1 RPS5-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G429660 [exp] 1847 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 1704 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G419800 [exp] 1690 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 1656 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 1654 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 1611 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 1603 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 1602 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 1600 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 121 / 2e-27 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 120 / 3e-27 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 116 / 8e-26 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 115 / 1e-25 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10022464 [exp] 112 / 1e-24 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10024173 [exp] 112 / 2e-24 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 111 / 2e-24 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 108 / 2e-23 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 108 / 2e-23 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 108 / 2e-23 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea
Representative CDS sequence Show only first row Show all	>Potri.001G426430.1 pacid=42789551 polypeptide=Potri.001G426430.1.p locus=Potri.001G426430 ID=Potri.001G426430.1.v4.1 annot-version=v4.1 ATGGCTATCGAAAGTGCTGGTGGATCCATTATAGCTATGCTAGCAGAACTCATGGTGGAACCAGTAGGAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGTTGAAGAATTCAAAGAACGAAAGGAGAACCTTGCTTTAGCACTAGATGGTCTGCAAAAAGATGTCGAAGCTGCTGAAAGGAATGCTGAAGAAAT TAAGAAAGGTGTCAAAAAGTGGCTGGAAGATGCAAACAACGAAATTGAAGCTGCGAATCCCTTGGAAAATGAAATAGGAAAAAATGGCAAATGCTTTACT TGGTGCCCAAACTGCATGCGACAATTCAAGTTGAGCAAGGCACTGGCCAAGAAGTCGGAGACTTTCAGAAAACTTGGAGAAATTAGCGAAAAGTTTAAAA CAGTGGCCCACAAAGCTCATCCTCAGCCCATAGAATTTCTCCCATCAAAGGAATTCACGCCCTCAGAATCGTCAAAAGAAGCATTGAAACAGATCATGAA AGCTCTCAAAGATGACAACGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCCTGGTGAAAGAAGTAGGCAGGAGAGCCAAAGAG TTGCAGCTTTTTCCTGAAGTTTTGATGGCTACGGTGTCCCAGAATCCAAATGTCACAGACATCCAGGATCGACTGGCAGATAAGTTAGGTCTGGATATTA AAGAAAAGAGTAAAGAAGGGAGAGCAGATCGATTATGGCAGAGACTGAAGCAAGTGGAGAAGATGCTTATTATCCTGGATGATGTTTGGAAACATATTGA CTTGAAAGAGATAGGGATCCCATTTGGTGATGATCACAGGGGTTGTAAGATTCTTCTAACAACACGTCTTCAAGGCATATGTTCTTCTATGGAGTGCCAG CAAAAAGTGTTTTTAAGAGTCTTACCTGAAGATGAAGCATGGGATTTATTCAGAATCAATGCAGGTTTACGTGATGGGGACTCTACCTTGAACACAGTGG CAAGGGAGGTTGCGAGAGAATGCAAAGGCTTGCCTATAGCACTTGTGACAGTGGGAAGGGCTCTAAGAGATAAATCTGCAGTTCAGTGGGAAGTAGCGTC TAAACAGCTCAAAGACTCTCAATTTCCGCGCATGGAACAATTTGATGAACAAAAAAATGCTTTTACATGTCTTAAGTTGAGCTATGAAAATTTGAAGCAC GAGGAAACCAAGTTATGTTTCTTGCTATGCAGTTTATTTCCAGAAGATTATGACATTCCAATTGAGGACTTGATGAGATATACAGTTGGCTATTGGTTAC ATCAAGATGAGGAGCTCATTGAAGATGCAAGGAAACAAGTTTATGTGGCAATCGAAAACCTCAAAGATTGTTGCATGCTGTTGGGCACTGAAACTGAAGA GCATGTGAAAATGCATGACTTGGTTCGTGACTTTGCTATTCAGATAGCATCATCAGAAGAATATGGATTCATGGTAAAGGCTGGCATTGGGTTGGAGAAG TGGCCAATGAGCAACAAAAGCTTTGAAGGTTGTACAACAATTTCGTTAATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTATGTCCACGGCTCA AAGTTCTATTATTAGAAGTGGATTATGGTTTGAATGTTCCTCAGAGGTTTTTTGAAGGGATGAAAGAAATTGAAGTTTTGTCTCTGAAGGGAGGGCGTTT GTCATTGCAATCACTTGAACTCTCAACGAAACTTCAATCGTTGGTGTTGATCTGGTGTGGATGCAAGAACCTCATTTGGTTGAGAAAGATGCAGAGACTT AAGATTCTTGGTTTTATACATTGCTTATCCATTGAAGAATTACCTGATGAAATAGGAGAGCTCAAGGAGTTAAGGTTGTTGGATGTGAGAGGTTGTCGAA GGCTAAGAAGGATCCCTGTGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAGCTGTTGATTGGGGGTCGCAGCTTTGAGGGATGGGATGTTGATGGATG TGACAGCACAGGAGGAATGAATGCAAGCCTAAAAGAACTAAACTTGTTGTCTCATTTAGCTGTATTATCATTGAGGATACCGAAGGTTGAATGCATTCCC AGAGATTTTGTTTTTCCCAGCTTGCTCAAATATGATATAAAATTATGGAATGCTAAAGAATATGATATAAAGCTTAGGGATCAGTTTGAGGCAGGACGAT ACCCAACCTCGACAAGATTAATTTTGGGAGGTACATCCTTAAATGCGAAGATATTTGAGCAGTTGTTTCCTACGGTGTCTCAAATTGCTTTTGAGAGTTT AGAGGGTTTAAAAAATATAGAATTGCACTCTAATCAGATGACCCAAAAAGGCTTCTTACATAAATTAGAATTTGTAAAAGTGAGGGATTGTGGGGATGTT TTCACTCTGTTTCCAGCAAAATTGCGGCAAGTTTTGAAAAATCTAAAGGAGGTGATTGTTGATAGCTGTAAATCAGTGGAGGAGGTATTTGAATTGGGTG AGGATGATGAAGGAAGCAGTGAGGAGAAGGAGCTGCCGTTGCTGTCATCTATAACACTGTTACAGCTGTTATGGTTACCTGAGCTCAAATGCATCTGGAA GGGGCCCACCAGACATGTCAGCCTCCAAAATCTAAATCTTCTGGATTTGTATTCTCTCGACAAACTGACATTTATCTTCACAGCGTCCCTCGCTCAAAGT CTACCAAAGCTAGAAAGACTTGACATAAGTGATTGTGGTGAATTGAAGCATATTATCAAAGAAGAGGATGGTGAAAGGAAAATAATTCCAGAGTCCCCTG GCTTCCCAAAATTAAAAAATATCTTCATAGAAGACTGTGGTAAACTGGAATATGTGCTCCCTGTCTCTGTGTCTCCAAGTCTTCTGAACCTGGAAGAGAT GCGGATTTTTAAAGCTCATAATTTAAAGCAAATATTTTTCAGTGTCGAAGATTGTCTCTACAGAGATGCCACCATCAAGTTCCCTAAGCTAAGAAGATTG TCTCTTTCAAATTGCAGCTTTTTTGGTCCAAAGAATTTTGCTGCCCAATTGCCTTCTTTGCAAATTCTAGAAATTGATGGCCACAAAGAATTGGGAAATT TGTTTGCACAGCTCCAGGGGTTGACAAATTTGGAAACATTACGCTTGAGCTTCCTGCTGGTGCCTGACATTAGGTGTATATGGAAGGGTCTTGTGCTGAG CAAATTGACTACTTTGGAGGTGGTTAAGTGTAAGAGACTGACACATGTATTCACATGTAGCATGATTGTCAGTCTAGTTCAACTGGAAGTTCTAAAGATA TTGTCCTGTGACGAATTAGAGCAAATCATTGCTAAGGATGATGATGAAAACGACCAGATATTGTTAGGAGATCATCTCCGATCTTTATGCTTTCCCAAAT TGCGTCAAATTGAGATAAGAGAATGCAACAAGTTGAAGAGCCTCTTCCCAATAGCCATGGCTTCAGGTCTCCCAAATCTCCGAATACTTAGAGTAACAAA ATCATCTCAATTATTGGGAGTATTTGGGCAAGAAGATCATGCTTCACTTGTCAACGTTGAGAAGGAGATGGTGCTTCCTAATCTGTGGGAGCTGTCGCTA GAACAATTATCAAGTATTGTCTGTTTTAGTTTCGGATGGTGTGATTATTTCTTATTCCCTCGTTTGGAGAAGTTCAAGGTCCTTCAATGTCCAAAGCTGA CCACAAAATTTGCTACTACACCAGATGGTTCAATGAGTGCTCAATCAGAGGTATCCGAAGTAGCTGAAGATTCAAGCATTAATAGAGAGTGGACCAGAAA TAAGGGGTGGAAAGAAGATGGAGAGACTCATGTCTTTGAGCTATGA
AA sequence Show only first row Show all	>Potri.001G426430.1 pacid=42789551 polypeptide=Potri.001G426430.1.p locus=Potri.001G426430 ID=Potri.001G426430.1.v4.1 annot-version=v4.1 MAIESAGGSIIAMLAELMVEPVGRQFRYMFCFNNFVEEFKERKENLALALDGLQKDVEAAERNAEEIKKGVKKWLEDANNEIEAANPLENEIGKNGKCFT WCPNCMRQFKLSKALAKKSETFRKLGEISEKFKTVAHKAHPQPIEFLPSKEFTPSESSKEALKQIMKALKDDNVNMIGLYGMGGVGKTTLVKEVGRRAKE LQLFPEVLMATVSQNPNVTDIQDRLADKLGLDIKEKSKEGRADRLWQRLKQVEKMLIILDDVWKHIDLKEIGIPFGDDHRGCKILLTTRLQGICSSMECQ QKVFLRVLPEDEAWDLFRINAGLRDGDSTLNTVAREVARECKGLPIALVTVGRALRDKSAVQWEVASKQLKDSQFPRMEQFDEQKNAFTCLKLSYENLKH EETKLCFLLCSLFPEDYDIPIEDLMRYTVGYWLHQDEELIEDARKQVYVAIENLKDCCMLLGTETEEHVKMHDLVRDFAIQIASSEEYGFMVKAGIGLEK WPMSNKSFEGCTTISLMGNKLAELPEGLVCPRLKVLLLEVDYGLNVPQRFFEGMKEIEVLSLKGGRLSLQSLELSTKLQSLVLIWCGCKNLIWLRKMQRL KILGFIHCLSIEELPDEIGELKELRLLDVRGCRRLRRIPVNLIGRLKKLEELLIGGRSFEGWDVDGCDSTGGMNASLKELNLLSHLAVLSLRIPKVECIP RDFVFPSLLKYDIKLWNAKEYDIKLRDQFEAGRYPTSTRLILGGTSLNAKIFEQLFPTVSQIAFESLEGLKNIELHSNQMTQKGFLHKLEFVKVRDCGDV FTLFPAKLRQVLKNLKEVIVDSCKSVEEVFELGEDDEGSSEEKELPLLSSITLLQLLWLPELKCIWKGPTRHVSLQNLNLLDLYSLDKLTFIFTASLAQS LPKLERLDISDCGELKHIIKEEDGERKIIPESPGFPKLKNIFIEDCGKLEYVLPVSVSPSLLNLEEMRIFKAHNLKQIFFSVEDCLYRDATIKFPKLRRL SLSNCSFFGPKNFAAQLPSLQILEIDGHKELGNLFAQLQGLTNLETLRLSFLLVPDIRCIWKGLVLSKLTTLEVVKCKRLTHVFTCSMIVSLVQLEVLKI LSCDELEQIIAKDDDENDQILLGDHLRSLCFPKLRQIEIRECNKLKSLFPIAMASGLPNLRILRVTKSSQLLGVFGQEDHASLVNVEKEMVLPNLWELSL EQLSSIVCFSFGWCDYFLFPRLEKFKVLQCPKLTTKFATTPDGSMSAQSEVSEVAEDSSINREWTRNKGWKEDGETHVFEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426430 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	1.00	0.9096
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	5.65	0.8468
AT4G27190			NB-ARC domain-containing disea...		Potri.001G434000 [exp]	6.78	0.8911	Pt-RGA-II24.63
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	7.34	0.8839
AT5G36930			Disease resistance protein (TI...		Potri.011G013700 [exp]	10.00	0.8104
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.015G145900 [exp]	10.00	0.8057
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	12.68	0.8072
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	18.97	0.8505
AT1G47530			MATE efflux family protein (.1...		Potri.002G132300 [exp]	25.82	0.7975
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	27.62	0.8501

Compare expression of checked genes

Potri.001G426430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.