Plant FIBer expression Database

Potri.001G426980 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G181700
[exp]
54 / 2e-09 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1)
Potri.002G079200
[exp]
50 / 7e-08 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G426980.1 pacid=42791684 polypeptide=Potri.001G426980.1.p locus=Potri.001G426980 ID=Potri.001G426980.1.v4.1 annot-version=v4.1
ATGGATGGTCTTTGTTCTTCGTGTTTGCTTGAGGCAAGGTTGGTTGGTTGTTACACGATCAACTCCTCAATAGGCGATTTCACGGAGATTCATGTCTTTG
AGCTGTGGTGCTGCAGATATGTTTTTGATTGGTGGGAAGTAATTCCTACTGTTCCATTGGCAATGGGATACAAATTGGCTTCACATTGTAACAGTCTTAT
TTACCATAGAAGATTTCGACTTATCTATCAGCTTTTACTTCTTCCTCGAAGGCTGCAAAGCAAAGAGCACCAGTTGATGACTGGTACAAAACTGAAGCCT
CCGAGCCGAAATGGATCAGTTGGTTATGATAATTTGTTACCCGAATTTGGCTCCAGCAACTCAGCAACTGGTGTGTAA
AA sequence
>Potri.001G426980.1 pacid=42791684 polypeptide=Potri.001G426980.1.p locus=Potri.001G426980 ID=Potri.001G426980.1.v4.1 annot-version=v4.1
MDGLCSSCLLEARLVGCYTINSSIGDFTEIHVFELWCCRYVFDWWEVIPTVPLAMGYKLASHCNSLIYHRRFRLIYQLLLLPRRLQSKEHQLMTGTKLKP
PSRNGSVGYDNLLPEFGSSNSATGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G426980
[exp]
0 1
Potri.009G036201
[exp]
4.47 0.8689
Potri.009G072966
[exp]
5.65 0.8621
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.015G027700
[exp]
8.36 0.8176
AT1G67025 unknown protein Potri.017G117230
[exp]
8.48 0.8966
AT5G19790 AP2_ERF RAP2.11 related to AP2 11 (.1) Potri.001G004700
[exp]
9.48 0.8590
AT4G27190 NB-ARC domain-containing disea... Potri.001G446966
[exp]
10.58 0.8351
AT1G76320 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) Potri.003G207100
[exp]
15.55 0.8304
AT4G23330 unknown protein Potri.003G127900
[exp]
15.87 0.8624
AT4G25330 unknown protein Potri.002G216900
[exp]
15.90 0.8296
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.008G053601
[exp]
16.12 0.8473

Potri.001G426980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.