Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17880 46 / 0.0001 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT1G69550 45 / 0.0003 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G26090 44 / 0.0006 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G429430 [exp] 1257 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426030 [exp] 1113 / 0 AT1G61310 114 / 1e-25 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.001G422800 [exp] 1024 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 968 / 0 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G434000 [exp] 931 / 0 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 907 / 0 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 694 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429660 [exp] 657 / 0 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G425500 [exp] 627 / 0 AT4G27220 251 / 7e-70 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G427210.1 pacid=42792678 polypeptide=Potri.001G427210.1.p locus=Potri.001G427210 ID=Potri.001G427210.1.v4.1 annot-version=v4.1 ATGTCGTGCTTATCCATTGAAGAATTACCTGATGAAATAGGAGAGCTCAAGGAGTTAAGGTTGTTGGATGTGACAGGTTGTCAAAGGCTAAGAAGGATCC CTGTGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAGCTGTTGATCGGACATCTCAGCTTTAAGGGATGGGATGTTGTTGGATGTGACAGCACAGGAGG AATGAATGCAAGCCTAACAGAACTAAATTCGTTGTCTCAGTTTGCCGTATTATCATTGAGGATACCGAAGGTTGAATGCATTCCCAGAGATTTTGTTTTT CCAGTTAGCTTGCGCAAATATGATATAATATTAGGGAATGCTTTTGGCTATGGGTATTATTTATCAACCTCGACAAGATTATATTGGGCTGTTACATCCT TAAATGCGAAGACATTTGAGCAATTGTTTTTACATAAATTAGAATCTGTAGTAGTGAGGGGTTGTGGGGATGTTTTCACTCTGTTTCCAGCAAGATTGCG GCAAGGTTTAAAAAATCTGAAGGAGGTGGTTATTGACAACTGTGAATCATTGGAAGAGGTATTTGAATTGGGTGAGGAGAAGGAGCTGCCGCTGCTGTCA TCTTTAACCAAGTTAGAGCTGTCACGTTTACCTGAGCTCAAATGCATATGGAAGGGGCCCACCAGTCATGTCAGCCTCCAAAGTCTTAATTTTCTGGAGT TGGGGTATCTGGACAAACTGGCATTTATCTTCACACCGTCCCTCGCTCAAAGTCTACCACAACTGCAAACACTTGACATAACAGCATGCGGTGAATTGAA GCATATTATAAGAGAAGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCCTTGCTTCCCACAATTAAAAAATATCTTCATACAACGGTGTGGTAAACTG GAATATGTCTTCCCTGTCTCCATGTCTCCAAGCCTTCCGAACCTGGAACAGATGACGATTTATTATGCTGACAATTTAAAGCAAATATTTTACAGTGGAG AAGGAGATGCACTCACCACAGATGGCATCATCAAGTTCCCTCAACTAAGAGAATTGTCTCTTGGGCTCCGATCAAATTACGGCTTTATAGGTCCAAGGAA TTTTGATTTTCAATTGCCTTCTTTGCAGAATCTAAACATTAAAGGCCACGAAGAAGTGGGTAATTGGTTGGCACAGCTACAACAAAACGGCTTCTTACAA AGATTAAAATCTGTAGCAGTGGACGATTGTGGGGATGTTCGCACTCCGTTTCCAGCAAAATTGCTGCGAGCTGTGAAAAATCTAAGCAGTGTGAACATTA ACGGCTGCAAATCATTGGAAGAGGTATTTGAATTAGGTGAGCCTGATGAAGGAAGTAGGGAGGAGAAGGAGCTGCCGCTTCTGTCATCTTTAACAGGGTT ACGGCTGTCACGTTTACCTGAGCTCAAATGCATTTGGAAGGGGCCCACCAGACATATCAGCCTCCAAAGTCTTGCTCATCTGTATTTGAATTCTCTCGAC AAACTGATATTTATCCTCACACCGTCTCTCGCTCGAAGTCTGCCAAAGCTAGAAATACTTGAGATAAGTGAATGCGGTGAATTGAAGCATATTATCAGAG AAGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCCTTGCTTCCCACAATTAAAAAATATCTTCATAGAACGGTGTGGTAAACTGGAATATGTCTTCCC TGTCTCCATGTCTCCAAGCCTTCCGAACCTGGAACAGATGACGATTTATTATGCTGACAATTTAAAGCAAATATTTTACAGTGGAGAAGGAGACGCACTC ACCACAGATGGCATCATCAAGTTCCCTCGATTAAGTGACTTGGTTCTTTCTTCCATATCAAATTACAGCTTTTTTGGTCCAACGAATCTTGCTGCCCAAT TGCCTTCTTTGCGATTTCTAAAAATCAATGGCCACAAAGAATTGGGAAATTTGTTTGCACAGCTCCAATGCACAAAATTTCTTTTGATGCAGGGGTTCAC AAATTTGAAAGAATTAAGCTTGGAATCCGTGCCTGACTTGAGGGGTCTTCTGCTGAGCAAATTGACTACTTTGGAGATGGCCGCCCATGGGGAGCAAAAC GGCTCCTTACATAGATTAGAACGTGTACGAGTGGACGATTGTGGGGATGTTCGCGCTCCGTTTCCAGCAAAATTGCTGCGAGCTTTGAAAAATCTAAGCA GTGTGAACATTAACGGCTGCAAATCATTGGAAGAGGTATTTGAATTAGGTGAGCCTGATGAAGGAAGTAGGGAGGAGAAGGAGCTGCCGCTTCTGTCATC TTTAACAGGGTTACGGCTGTCAGGTTTACCTGAGCTCAAATGCATGTGGAAGGGGCCCACCAGACATGTCAGCCTCCAAAGTCTTGCTTATCTGGATTTG TGGTCTCTGGACAAACTGACATTTATATTCACACCGTCCCTCGCTCGAAGTCTGCCAAAGCTAGAAAGACTTTACATAGGTAAATGCGGTCAATTGAAGC ATATTATCAGAGAAGAGGATGGTGAAAAGGAAATAATTCCAGAGCCTCCTGGGCAGGATGGTCAAGCTTCACCTATCAACGTTGAGAAGGAGATAGTGCT TCCTAATCTAAAGGAGTTGTCGATACAACAATTATCAAGTATTGTCTGTTTTAGTTTCGGATGGTGTGATTATTTGTTATTCCCTCGTTTGGAGAAGTTG GAGGTCCATCTATGTCCAAAGCTGACCACAAAATTTGCTAGTACACCAGATGGTTCAATGAGTGCTCAATCAGAGGTATCTGAAGTAGCTGAAGATTCAA GCATTTATAGAGAGTGGACCCGAGATAAGGGGTGGAAAGAACGATGA
AA sequence Show only first row Show all	>Potri.001G427210.1 pacid=42792678 polypeptide=Potri.001G427210.1.p locus=Potri.001G427210 ID=Potri.001G427210.1.v4.1 annot-version=v4.1 MSCLSIEELPDEIGELKELRLLDVTGCQRLRRIPVNLIGRLKKLEELLIGHLSFKGWDVVGCDSTGGMNASLTELNSLSQFAVLSLRIPKVECIPRDFVF PVSLRKYDIILGNAFGYGYYLSTSTRLYWAVTSLNAKTFEQLFLHKLESVVVRGCGDVFTLFPARLRQGLKNLKEVVIDNCESLEEVFELGEEKELPLLS SLTKLELSRLPELKCIWKGPTSHVSLQSLNFLELGYLDKLAFIFTPSLAQSLPQLQTLDITACGELKHIIREEDGEREIIPESPCFPQLKNIFIQRCGKL EYVFPVSMSPSLPNLEQMTIYYADNLKQIFYSGEGDALTTDGIIKFPQLRELSLGLRSNYGFIGPRNFDFQLPSLQNLNIKGHEEVGNWLAQLQQNGFLQ RLKSVAVDDCGDVRTPFPAKLLRAVKNLSSVNINGCKSLEEVFELGEPDEGSREEKELPLLSSLTGLRLSRLPELKCIWKGPTRHISLQSLAHLYLNSLD KLIFILTPSLARSLPKLEILEISECGELKHIIREEDGEREIIPESPCFPQLKNIFIERCGKLEYVFPVSMSPSLPNLEQMTIYYADNLKQIFYSGEGDAL TTDGIIKFPRLSDLVLSSISNYSFFGPTNLAAQLPSLRFLKINGHKELGNLFAQLQCTKFLLMQGFTNLKELSLESVPDLRGLLLSKLTTLEMAAHGEQN GSLHRLERVRVDDCGDVRAPFPAKLLRALKNLSSVNINGCKSLEEVFELGEPDEGSREEKELPLLSSLTGLRLSGLPELKCMWKGPTRHVSLQSLAYLDL WSLDKLTFIFTPSLARSLPKLERLYIGKCGQLKHIIREEDGEKEIIPEPPGQDGQASPINVEKEIVLPNLKELSIQQLSSIVCFSFGWCDYLLFPRLEKL EVHLCPKLTTKFASTPDGSMSAQSEVSEVAEDSSIYREWTRDKGWKER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G427210 [exp]	0	1
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.006G167700 [exp]	3.16	0.9010
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	4.24	0.9222
AT4G27190			NB-ARC domain-containing disea...		Potri.001G435100 [exp]	4.47	0.8734
					Potri.001G425600 [exp]	5.65	0.8823
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.018G091600 [exp]	6.48	0.8946
AT3G54070			Ankyrin repeat family protein ...		Potri.006G062700 [exp]	18.70	0.8573
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019300 [exp]	19.20	0.8324
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113000 [exp]	20.97	0.8271
AT4G27220			NB-ARC domain-containing disea...		Potri.001G427440 [exp]	21.16	0.8221
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Potri.018G143600 [exp]	22.04	0.8272

Compare expression of checked genes

Potri.001G427210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.