Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02260 78 / 1e-18 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435200 [exp] 147 / 3e-48 AT4G02260 78 / 1e-18 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G432960 [exp] 119 / 4e-37 AT4G02260 84 / 9e-21 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.014G126700 [exp] 87 / 1e-21 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003600 [exp] 76 / 7e-18 AT4G02260 508 / 8e-174 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10008210 [exp] 76 / 7e-18 AT4G02260 566 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G434400.2 pacid=42789157 polypeptide=Potri.001G434400.2.p locus=Potri.001G434400 ID=Potri.001G434400.2.v4.1 annot-version=v4.1 ATGAGCTACAAAGTTGGGTCTGCTTTAAGGTTCCATGACTATGATGCTAATTTCAAGGCTGAGGTCCTTTCTTTCATCCAGATTAGCTGGCTCAATGAAG TTAGGGAATGGCAAGAGGAGTTTGTTGGCAATAGGAACTGTAGGGAATTTGTAGAGACCATTACCAGAGATCTGCTCGGTGGTTGTGTCTTTGTGTTTTC ACTAAGAGGAGAGGTAAAATTATGTATTAATTTGCACTGA
AA sequence Show only first row Show all	>Potri.001G434400.2 pacid=42789157 polypeptide=Potri.001G434400.2.p locus=Potri.001G434400 ID=Potri.001G434400.2.v4.1 annot-version=v4.1 MSYKVGSALRFHDYDANFKAEVLSFIQISWLNEVREWQEEFVGNRNCREFVETITRDLLGGCVFVFSLRGEVKLCINLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.001G434400 [exp]	0	1
					Potri.015G013950 [exp]	5.65	0.7733
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.001G432960 [exp]	8.30	0.7022
AT3G06600			unknown protein		Potri.008G103600 [exp]	8.77	0.7357
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.012G014600 [exp]	11.48	0.7646
AT5G27690			Heavy metal transport/detoxifi...		Potri.002G206900 [exp]	14.45	0.7797
AT1G68585			unknown protein		Potri.015G053600 [exp]	15.42	0.7176
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.002G032700 [exp]	26.32	0.7744
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.001G164700 [exp]	41.56	0.7551
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Potri.011G031600 [exp]	49.74	0.7462
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	50.75	0.7245

Compare expression of checked genes

Potri.001G434400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.