Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26090 60 / 2e-09 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G17880 51 / 1e-06 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT5G66900 46 / 3e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G38340 45 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 45 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G66890 44 / 0.0001 Leucine-rich repeat (LRR) family protein (.1) AT1G27170 44 / 0.0001 transmembrane receptors;ATP binding (.1.2) AT1G63860 44 / 0.0002 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 44 / 0.0002 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 44 / 0.0002 disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G422800 [exp] 554 / 0 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G433466 [exp] 553 / 0 AT4G27190 261 / 1e-71 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 544 / 0 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 544 / 0 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G425500 [exp] 540 / 0 AT4G27220 251 / 7e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.001G434000 [exp] 520 / 5e-172 AT4G27190 271 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 518 / 3e-171 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 510 / 1e-170 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429660 [exp] 501 / 5e-163 AT4G27220 227 / 6e-61 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007359 [exp] 47 / 3e-05 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 47 / 3e-05 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10039850 [exp] 43 / 0.0005 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10022464 [exp] 42 / 0.0007 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10008320 [exp] 42 / 0.001 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G435000.2 pacid=42788280 polypeptide=Potri.001G435000.2.p locus=Potri.001G435000 ID=Potri.001G435000.2.v4.1 annot-version=v4.1 ATGGGCAATAAACTAGCAGAACTTCCTGAAGGATTGGTATGTCCACAGCTCAAAGTTCTATTATTAGAACTGGATGATGGTATGAATGTTCCAGATAAGT TTTTTGAAGGGATGAGAGAAATTGAAGTTCTGTCTCTGAAGGGAGGGTGTTTGTCATTGCAATCACTTGAACTCTCAACGAAACTTCAATCGTTGGTGTT GATCAGGTGTGGATGCAAGGACCTCATTTGGTTGAGAAAGATGCAGAGACTTAAGATTCTTGTTTTTAAGTGGTGCTTATCCATTGAAGAATTACCCGAT GAAATAGGAGAGCTCAAGGAGTTAAGGTTGTTGGATGTAACAGGTTGTCAAAGGCTAAGAAGGATCCCTGTGAATTTGATTGGAAGGTTGAAGAAGTTAG AAGAGCTGTTGATCGGGCATCGCAGCTTTGATGGATGGGATGTTGTTGGATGTGACAGCACAGGAGGAATGAATGCAAGCCTGAAAGAACTAAATTCGTT GTCTCAGTTAGCCGTATTATCATTGAGGATACCGAAGATGAAATGCATTCCCAGAGATTTTGTTTTTCCAGTTAGCTTGCTCAAATATGATATGATATTA GGGAATTGGTTAGTGGCAGGAGGATACCCAACCACGACAAGATTAAATTTGGCTGGTACATCCTTAAATGCGAAGACATTTGAGCAATTGGTTTTACATA AATTAGAATCTGTAAGCGTGACGGATTGTGGGGATGTTTTCACTCTGTTTCCAGCAAGATTGCGGCAAGTTTTGAAAAATCTAAAGGAGGTGTTTGTTGA GAGCTGTAGATCATTGGAAGAGGTATTTGAATTGGGTGAGGCTGATGAAGGAAGCAGTGAGGAGAAGGAGATGCTGCTGCTGTCATCTTTAACAGAGTTA CGGTTGCGGGGGTTACCTGAGCTCAAATGCATATGGAAGGGGCCCACCAGACATGTCAGCTTCCAAAGTTTTATTCATCTGAGTTTGAATTCTCTCGACA AACTGGCATTTATCTTCACACCGTCCCTCGCTCAAAGTCTGCCAAAGCTAGAAGTTCTTTTCATAAATAACTGCGGTGAATTGAAGCATATTATCAGAGA AGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCTTTGCTTCCCAGAATTAAAAACTATCAACAAATCTTTCTGTGATAAACTGTAA
AA sequence Show only first row Show all	>Potri.001G435000.2 pacid=42788280 polypeptide=Potri.001G435000.2.p locus=Potri.001G435000 ID=Potri.001G435000.2.v4.1 annot-version=v4.1 MGNKLAELPEGLVCPQLKVLLLELDDGMNVPDKFFEGMREIEVLSLKGGCLSLQSLELSTKLQSLVLIRCGCKDLIWLRKMQRLKILVFKWCLSIEELPD EIGELKELRLLDVTGCQRLRRIPVNLIGRLKKLEELLIGHRSFDGWDVVGCDSTGGMNASLKELNSLSQLAVLSLRIPKMKCIPRDFVFPVSLLKYDMIL GNWLVAGGYPTTTRLNLAGTSLNAKTFEQLVLHKLESVSVTDCGDVFTLFPARLRQVLKNLKEVFVESCRSLEEVFELGEADEGSSEEKEMLLLSSLTEL RLRGLPELKCIWKGPTRHVSFQSFIHLSLNSLDKLAFIFTPSLAQSLPKLEVLFINNCGELKHIIREEDGEREIIPESLCFPELKTINKSFCDKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	0	1
					Potri.001G432333 [exp]	2.00	0.9722
AT4G27190			NB-ARC domain-containing disea...		Potri.001G420000 [exp]	4.58	0.9618
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016000 [exp]	6.00	0.9529
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	6.32	0.9600
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.005G208301 [exp]	8.36	0.9431
AT4G27190			NB-ARC domain-containing disea...		Potri.001G434000 [exp]	9.48	0.9423	Pt-RGA-II24.63
					Potri.014G003451 [exp]	10.00	0.9336
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	10.90	0.9396
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	13.85	0.9220
AT4G02550			unknown protein		Potri.011G163248 [exp]	14.83	0.9238

Compare expression of checked genes

Potri.001G435000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.