Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20390 250 / 2e-85 endoribonuclease L-PSP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139600 [exp] 373 / 8e-134 AT3G20390 245 / 2e-83 endoribonuclease L-PSP family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040074 [exp] 281 / 3e-97 AT3G20390 243 / 1e-82 endoribonuclease L-PSP family protein (.1) Lus10021523 [exp] 274 / 2e-94 AT3G20390 242 / 3e-82 endoribonuclease L-PSP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0534 [poplar] [flax] YjgF-like PF01042 [poplar] [flax] Ribonuc_L-PSP Endoribonuclease L-PSP
Representative CDS sequence Show only first row Show all	>Potri.001G435700.1 pacid=42791323 polypeptide=Potri.001G435700.1.p locus=Potri.001G435700 ID=Potri.001G435700.1.v4.1 annot-version=v4.1 ATGTCGTGGTGTGCTCTAAAACCCTTAAATGTCTCGTTGATGAACGCCGGCGCAGTGCGCAACCGAACCCCTTTTTCCATCGGCGGCATTGGCTGCGCCT CCGTCATCAACACCGGTCTCTGGCGGCAGTGTTGTTCCACTCGATTAGCCACTCCTCCTTTCGCTTCCTTGACCACTTACACTTTACCTCCTAAAAAAGA GGCTGTTAAAACTGACAAGGCACCAGCTGCATTGGGACCATATTCTCAAGCAATTAAATCCAATAACCTAGTATTTGTTTCAGGTGTTTTAGGTCTCATT CCAGAGACTGGGAAGTTTGTCTCGGAGAATGTTGAGGATCAGACAGAACAGTTACTTAAGAATATGGGGGAGATACTGAAAGCTAGTGGTAGCGACTATT CCTTAGTAGTAAAGACAACAATAATGTTGGCTGACTTGAAAGACTTCAAGAAAGTGAATGATATCTATGCAAAATACTTCCCTGCACCATTTCCTGCTCG CTCAACATATCAGGTAGCAGCATTGCCATTGGATGCCAAGATTGAAGTCGAGTGCATTGCTGAACTTCCCCAAAAGGTGGAGCCTCAGCCAGTTTCGCTC GCGTGA
AA sequence Show only first row Show all	>Potri.001G435700.1 pacid=42791323 polypeptide=Potri.001G435700.1.p locus=Potri.001G435700 ID=Potri.001G435700.1.v4.1 annot-version=v4.1 MSWCALKPLNVSLMNAGAVRNRTPFSIGGIGCASVINTGLWRQCCSTRLATPPFASLTTYTLPPKKEAVKTDKAPAALGPYSQAIKSNNLVFVSGVLGLI PETGKFVSENVEDQTEQLLKNMGEILKASGSDYSLVVKTTIMLADLKDFKKVNDIYAKYFPAPFPARSTYQVAALPLDAKIEVECIAELPQKVEPQPVSL A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20390			endoribonuclease L-PSP family ...		Potri.001G435700 [exp]	0	1
AT1G68260			Thioesterase superfamily prote...		Potri.010G123102 [exp]	4.00	0.8410
AT2G41475			Embryo-specific protein 3, (AT...		Potri.018G131800 [exp]	4.24	0.7846
AT5G09450			Tetratricopeptide repeat (TPR)...		Potri.017G048500 [exp]	6.70	0.7928
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.017G001800 [exp]	9.94	0.8000	Pt-COS1.2
AT1G49740			PLC-like phosphodiesterases su...		Potri.004G140200 [exp]	10.39	0.7607
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.017G067332 [exp]	11.74	0.8404
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G120800 [exp]	12.00	0.7906
AT5G28060			Ribosomal protein S24e family ...		Potri.005G049400 [exp]	12.36	0.7867	Pt-RPS24.1
AT4G35360			Uncharacterised conserved prot...		Potri.004G207700 [exp]	13.85	0.7637
AT5G48920		TED7	tracheary element differentiat...		Potri.005G060700 [exp]	16.30	0.7576

Compare expression of checked genes

Potri.001G435700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.