Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) AT2G17730 146 / 2e-43 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 145 / 4e-43 RING/U-box superfamily protein (.1) AT5G66070 140 / 5e-41 RING/U-box superfamily protein (.1.2) AT1G74410 127 / 4e-36 RING/U-box superfamily protein (.1) AT1G76410 79 / 7e-18 ATL8 RING/U-box superfamily protein (.1) AT2G17450 77 / 3e-17 RHA3A RING-H2 finger A3A (.1) AT1G20823 77 / 4e-17 RING/U-box superfamily protein (.1) AT5G01880 75 / 1e-16 RING/U-box superfamily protein (.1) AT2G46160 74 / 9e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 151 / 3e-45 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 139 / 2e-40 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.010G072700 [exp] 80 / 2e-17 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.002G165200 [exp] 76 / 1e-16 AT3G61550 204 / 5e-67 RING/U-box superfamily protein (.1) Potri.014G091000 [exp] 76 / 1e-16 AT3G61550 176 / 1e-55 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 74 / 6e-16 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 74 / 6e-16 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 73 / 8e-16 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 74 / 1e-15 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021524 [exp] 237 / 8e-79 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10040073 [exp] 160 / 2e-49 AT3G20395 94 / 5e-24 RING/U-box superfamily protein (.1) Lus10028406 [exp] 145 / 8e-43 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 145 / 8e-43 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10001654 [exp] 111 / 2e-29 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10021628 [exp] 106 / 9e-28 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10037264 [exp] 77 / 3e-16 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10035677 [exp] 76 / 8e-16 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10030728 [exp] 74 / 9e-16 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10025146 [exp] 73 / 1e-15 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G435800.2 pacid=42790508 polypeptide=Potri.001G435800.2.p locus=Potri.001G435800 ID=Potri.001G435800.2.v4.1 annot-version=v4.1 ATGATGAAAAGGTGGTTTTCTGGCGTAACAAAAGCTTCTTTCAGGTGTAAAGAGGCCGTTTCTTCGTGGGTTTTTGCAGCAAAGCTAGAGGGTTTTGGAA CTGGACTTTTCATTAGATCAGTTCTGAAGAATTCCGTCCTTGCTGCATCTACTTGTATTTTTGCACTAGGAGGGGCTCTAGTGGGATCAATCATAGGAGC CATGAAAGGTCAGACAACAGAAACTGGGTTTCTTCGTGGCTCTGGAGTAGGTGCTGTTGCAGGTGCCATCACTGCTGTTCAATTGCTAGAATCAATTACT AATGGTGAACCATTGTCCAAGGTTGCTCTCTTGCACAGCTTGTTGAATGGGAAGGTATTCATGGAATGGGTAGGTCCTGCGGTGCTAAAAGCCTATCAAT GGCAGGTTAATGCATTGGAAACAACTTACAGAGAAATATCAGACATTTATGACACAAGTGAAGTTAGAGGCTTGTCCGAGGATTGTATCAAAAAACTTCC TGAATGTACATTCAAATCTGACAATAACATTGTTGAACAATGCTGCCTCGCCTCTAGTTGTGCTATTTGCTTGCAGGATTTCAAGGATGGAGATTCAATG AGAAAACTTCCCCACTGTGGACACTACTTTCATCTGTCCTGCCTAGATAAATGGCTGGCTACAAACGGGTCTTGCCCAAATTGTAGAAATTCTGTATGTG ATGACAATGATGTATAG
AA sequence Show only first row Show all	>Potri.001G435800.2 pacid=42790508 polypeptide=Potri.001G435800.2.p locus=Potri.001G435800 ID=Potri.001G435800.2.v4.1 annot-version=v4.1 MMKRWFSGVTKASFRCKEAVSSWVFAAKLEGFGTGLFIRSVLKNSVLAASTCIFALGGALVGSIIGAMKGQTTETGFLRGSGVGAVAGAITAVQLLESIT NGEPLSKVALLHSLLNGKVFMEWVGPAVLKAYQWQVNALETTYREISDIYDTSEVRGLSEDCIKKLPECTFKSDNNIVEQCCLASSCAICLQDFKDGDSM RKLPHCGHYFHLSCLDKWLATNGSCPNCRNSVCDDNDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20395			RING/U-box superfamily protein...		Potri.001G435800 [exp]	0	1
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.008G079066 [exp]	6.32	0.9462
					Potri.011G102400 [exp]	8.66	0.9448
AT1G32250			Calcium-binding EF-hand family...		Potri.014G030200 [exp]	9.69	0.9454
AT5G20860			Plant invertase/pectin methyle...		Potri.006G135100 [exp]	11.31	0.9306
AT3G62950			Thioredoxin superfamily protei...		Potri.002G208500 [exp]	12.72	0.9332
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028600 [exp]	15.16	0.9300
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.014G108500 [exp]	17.46	0.9344
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	18.86	0.9352
AT4G08300			nodulin MtN21 /EamA-like trans...		Potri.005G176200 [exp]	21.49	0.9309
					Potri.006G163201 [exp]	23.74	0.7331

Compare expression of checked genes

Potri.001G435800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.