Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSPK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53700 475 / 3e-165 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) AT3G14370 464 / 1e-160 WAG2 Protein kinase superfamily protein (.1) AT2G34650 307 / 5e-100 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G47750 305 / 2e-97 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G40030 298 / 2e-95 Protein kinase superfamily protein (.1) AT4G26610 297 / 4e-95 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT2G44830 303 / 2e-94 Protein kinase superfamily protein (.1) AT5G55910 294 / 3e-94 D6PK D6 protein kinase (.1) AT3G12690 296 / 6e-94 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 292 / 3e-93 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139800 [exp] 625 / 0 AT1G53700 514 / 3e-180 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.015G093400 [exp] 318 / 1e-103 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G003800 [exp] 310 / 8e-99 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 307 / 1e-97 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 308 / 5e-97 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 308 / 1e-96 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 296 / 2e-95 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 301 / 1e-94 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.010G175900 [exp] 298 / 1e-94 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036150 [exp] 308 / 2e-100 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10042911 [exp] 307 / 4e-99 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 308 / 4e-98 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 299 / 2e-94 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10006273 [exp] 298 / 4e-93 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10005583 [exp] 286 / 4e-93 AT1G53700 360 / 2e-122 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Lus10035591 [exp] 298 / 1e-91 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10022534 [exp] 290 / 1e-91 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10020571 [exp] 293 / 2e-91 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 297 / 3e-91 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G435900.2 pacid=42790738 polypeptide=Potri.001G435900.2.p locus=Potri.001G435900 ID=Potri.001G435900.2.v4.1 annot-version=v4.1 ATGGATATTGAAGAAACCCAGCTTCATCGCTGCCCATCTGATACCGATCTTGATTTCAGCTTCACCTCCACTGCCACTGACCGCACTTTCGCCTCCTCAA GTGCACGTTCTAGTCTAACTCTCAGCTTCAACGACGGCCTTTCCACCACCACAATGACAACAACAAGCTCTCTCCACCACCGTAAATGTGATCAGCATTG GTCAGCTATAAAAACAGCCACCAGCCTCTCAACAGATGGCAGACTCCACCTCCGCCACCTCAAACTCCTCCGTCATCTTGGTACCGGAAATCTTGGCCGG GTCTTTCTCTGCCAACTTAGAGACTTCAACAATGCAAACTTTGCTTTGAAAGTTATGGATAAAGATTCTTTAACCAAGAAAAAACTATCTCAAGTTCAGA TGGAAGGTGAGATTCTCTCCATGCTAGACCACCCTTTCTTGCCTACACTCTATGCCCATCTTGAAGTCTCTCATTACAGCTGCCTTTTGATTGATTATTG CCCGAATGGAGACCTTCACTCTTTGCTACGTAAACAGCCTGCTAACCGGTTACCGGTTCAGGCTGTTAAGTTCTTCGCTGCTGAGGTCTTGGTAGCTTTG GAGTATTTGCATTCCCTAGGTGTTGTTTACCGGGATCTAAAGCCGGAGAACATATTATTACGTGAAGATGGTCATATAATGTTGTCTGACTTCGATTTGT GCTTCAAAGCTGATGTTGTTCCCACTTTTGATAGAAGGGTCCACAGAAAAAGAATGGCGGGGTCCATGAGAAGAGGGGGTGATTGTTTTGGTACGTTTAG CCGGAGGGGAGTAGTGGAGGAGGAAGTGGTGGAGGAGGAGTTTGTGGCGGAGCCCACGGAAGCTTTGTCGAGATCATGTGTTGGGACCCATGAGTACTTG GCTCCTGAGTTGTTGTCTGGAAATGGTCATGGTAATGGAGTGGATTGGTGGGCTTTTGGGGTTTTGGTCTATGAATTATTGTATGGAACGACACCGTTTA AGGGAGGGAGTAAAGAGAGCACCTTGCGCAATATAGCATCGAGTAAGCACGTGAACTTCCATGTGATGGAAGGGGAAGGTAAAGGAATGGAAGAGGCTAA GGATCTGATCGAGAAGTTGTTAGTCAAGGATCCAAGGCAGAGGCTAGGGTGCACCAAGGGTGCCACAGATATTAAAAGACACCCTTTTTTTTATGGGATC AAGTGGCCTTTGATAAGGAACTATAAGCCACCTGAGGTTCGAGGGCTTGTGGCAAAAAAAGGGAAGAGCCACTCAAGTGGTCACGTGCTAGGGGGTGTTT CATCCCCTAGGAGGAAGTGTTGGTGGAGGCTGTGGAAGAAGGGTACTGGTGGCGGTGGTGGCGGTCTTGGCAACTTGTTGAGAAATAAGGGATCAAGTCC AAGATATTATCTTTTGAATAACAACCAACATTACAATGCTAATTATCATCATTATAAGGTTAGGAAATGTGCTTAG
AA sequence Show only first row Show all	>Potri.001G435900.2 pacid=42790738 polypeptide=Potri.001G435900.2.p locus=Potri.001G435900 ID=Potri.001G435900.2.v4.1 annot-version=v4.1 MDIEETQLHRCPSDTDLDFSFTSTATDRTFASSSARSSLTLSFNDGLSTTTMTTTSSLHHRKCDQHWSAIKTATSLSTDGRLHLRHLKLLRHLGTGNLGR VFLCQLRDFNNANFALKVMDKDSLTKKKLSQVQMEGEILSMLDHPFLPTLYAHLEVSHYSCLLIDYCPNGDLHSLLRKQPANRLPVQAVKFFAAEVLVAL EYLHSLGVVYRDLKPENILLREDGHIMLSDFDLCFKADVVPTFDRRVHRKRMAGSMRRGGDCFGTFSRRGVVEEEVVEEEFVAEPTEALSRSCVGTHEYL APELLSGNGHGNGVDWWAFGVLVYELLYGTTPFKGGSKESTLRNIASSKHVNFHVMEGEGKGMEEAKDLIEKLLVKDPRQRLGCTKGATDIKRHPFFYGI KWPLIRNYKPPEVRGLVAKKGKSHSSGHVLGGVSSPRRKCWWRLWKKGTGGGGGGLGNLLRNKGSSPRYYLLNNNQHYNANYHHYKVRKCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	0	1	Pt-PSPK3.1
AT1G75640			Leucine-rich receptor-like pro...		Potri.002G027400 [exp]	1.41	0.9241
AT1G54650			Methyltransferase family prote...		Potri.013G044300 [exp]	3.00	0.8388
					Potri.001G020140 [exp]	3.46	0.8593
					Potri.003G204425 [exp]	3.46	0.8743
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	3.46	0.9143
AT2G03630			unknown protein		Potri.008G096300 [exp]	3.74	0.8479
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	5.65	0.8391
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	6.32	0.8368
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.009G115300 [exp]	7.87	0.7822	Pt-AGB1.1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	8.66	0.8165

Compare expression of checked genes

Potri.001G435900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.